Sequence
atgc intronic sequence ATGC exonic sequenceTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagcatttgaccttttcttataatcttgctggaggaaatgctctgtattttttcacctctgttttgctacgactaagactcataattcttaaaatttccattcttgttccctctgcag
Basic information
species | Glycine max |
transcript | GLYMA06G14030.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G14030.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 6
TCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagcatttgaccttttcttataatcttgctggaggaaatgctctgtattttttcacctctgttttgctacgactaagactcataattcttaaaatttccattcttgttccctctgcag
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TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGgtatgctacaatttgcttgtactctgtt-tttcgttatcctttatgctcatgtttctttggcatttgatgcatt-tgatacag-----------------------------------------
upper sequence: GLYMA06G14030.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G173428_T02 (Zea mays), 5'ss of exon 5
TCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagcatttgaccttttcttataatcttgctggaggaaatgctctgtattttttcacctctgttttgctacgactaagactcataattcttaaaatttccattcttgttccctctgcag
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TCTGATGATGAACGGGAAATGTGTGCGAGGACTATTTACTGCACAAACATTGACAAGAAGgt--------------tccctacctacactcatgctataccactaggtgttcattctgtcat---tgttctgtt----ttaatatatgcacttgctgcag------------------------
upper sequence: GLYMA06G14030.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G036634_T01 (Zea mays), 5'ss of exon 15
TCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagcatttgaccttttcttataatcttgctggaggaaatgctctgtattttttcacctctgttttgctacgactaagactcataattcttaaaatttccattcttgttccctctgcag
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TCTGATGATGAACGGGAAATGTGTGCGAGGACTATTTACTGCACAAACATTGACAAGAAGgt--------------tccctacctacactcatgctataccactaggtgttcattctgtcat---tgttttgtt----ttaatatatgcacttgttgcag------------------------
upper sequence: GLYMA06G14030.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G161649_T01 (Zea mays), 5'ss of exon 4
TCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagcatttgaccttttcttataatcttgctggaggaaatgctctgtattttttcacctctgttttgctacgactaagactcataattcttaaaatttccattcttgttccctctgcag
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TCTGATGATGAACGGGAAATGTGTGCGAGGACTATTTACTGCACAAACATTGACAAGAAGgt--------------tccctacctacactcatgctataccactagctgttcattctgtcat---tgttctgtt----ttaatatatgcacttgctgcag------------------------
upper sequence: GLYMA06G14030.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G132286_T01 (Zea mays), 5'ss of exon 5
TCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagcatttgaccttttcttataatcttgctggaggaaatgctctgtattttttcacctctgttttgctacgactaagactcataattcttaaaatttccattcttgttccctctgcag
||||| |||||| |||| |||||| | || || ||||| |||||||| |||||||||||||| | | | || | || |||| | | | | | ||| | ||| |||| || | ||| | | || || |
TCTGATGATGAACGGGAAATGTGTGCGAGGACTATTTACTGCACAAACATTGACAAGAAGgt--------------tccctacctacactcatgctataccactaggtgttcattctgtcat---tgttctgtt----ttaatatatgcacttgctacag------------------------
upper sequence: GLYMA06G14030.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 4
TCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagcatttgaccttttcttataatcttgctggaggaaatgctctgtattttttcacctctgttttgctacgactaagactcataattcttaaaatttccattcttgttccctctgcag
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CCTGACGATGAACGTGAAATGTGTGCAAGGACAATCTACTGCACAAACATTGACAAGAAGgt---ttggtacctg-----cactcatgctactaccattaggtattcattatgtcat---ggttctattttaatacacgcag------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990104|gb|BI315777.1|BI315777EST: AAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAG CTTACTCAAGCCGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAG
genomic: AAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagc ... ccctctgcagCTTACTCAAGCCGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGgtagtttagcatttgaccttttcttataatcttgctggaggaaatgctctgtattttttcacctctgttttgctacgactaagactcataattcttaaaatttccattcttgttccctctgcag
- - - - - - - GGAGAT
- - - - - - - GAGATG
- - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG