Sequence
atgc intronic sequence ATGC exonic sequenceAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAAgtaagtttgttgtggtccttttatttaactcctccagccctggctttttgacataacctaatgatttcattgcacgaagccaatctgttgtgattcaagt...
Basic information
species | Glycine max |
transcript | GLYMA06G13330.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 7
AATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAAgtaagtttgttgtggtccttttatttaactcctccagccctggctttttgacataacctaatgatttcattgcacgaagccaatctgttgtgattcaagt
|| | | | || ||||| || || || || |||| | | || |||||||||||| |||| ||||||||||||||| | ||||| ||||| ||| | | ||| | || | || | || | || | ||| || | | || |
GATTTGGGGGAAACAGATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCAAgtagattttctttcctccaactgttattgtttattcttactaacaattgaattgtgaatatcaaattctaaatttgaga--gttttcttatag-------
upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 8
AATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAAgtaagtttgttgtggtccttttatttaactcctccagccctggctttttgacata--acctaatgatttcattgcacgaagccaatctgttgtgattcaagt----------------------------------------
||||||| | |||||||||||||||||| |||||||||| |||||| ||||||| || || |||||||||| | ||||| ||||| |||||||| | || || | ||| | ||| | || || | | | | | | | || | | ||| | |||||| |
AATCTTGGGGCTACTGATTATTACTGCCCTGCTTGCAAAGCAAAGTTTAATTTTGAATTGTCAGATTCAGAAAGATGGCAGCCTAAAGTCAAgtaagtctttttctatctcccttttttgcctttccttatttatctattcatttttttgctttctattactagttcatttgccagctatgtagc-attcaaatgcgtattggatgtttaacaatggtagaattttcaatacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193331648|gb|FK295460.1|FK295460EST: TTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAA GTGGAGCAAAAACAATGGGCAGCT
genomic: TTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAAgtaagtttgt ... tttggtacagGTGGAGCAAAAACAATGGGCAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTGAAgtaagtttgttgtggtccttttatttaactcctccagccctggctttttgacataacctaatgatttcattgcacgaagccaatctgttgtgattcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc