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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttctttttctctcctttagttaccaagtctctttgtgcaattacaaagagtgactgtaatggttcactttcag

Basic information

species Glycine max
transcript GLYMA06G12570.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12570.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g01180.t01 (Vitis vinifera), 5'ss of exon 7
GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttt---ctttttctctcctttagttaccaagtctctttgtgcaattacaaagagtgactgtaatgg--ttcactttcag-----------------------------
 |||||||||| |||||||||||||| ||||||||||| |||||    |||||||||||||||||||||||||||||  |||||  ||| | ||   || ||| | | ||||  ||      | |  || | |  || ||     |   | |  ||   || | ||   |                             
AGTGTGAAGGACGAAGTGATTGTTGACCTTGTTGACCAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935386|gb|BQ080416.1|BQ080416
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|207752136|gb|GD724521.1|GD724521
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|207710083|gb|GD691173.1|GD691173
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTT
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTT
EST: gi|308098253|gb|HO759994.1|HO759994
EST:     ACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: ACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|207752902|gb|GD725482.1|GD725482
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|192296865|gb|FG991906.1|FG991906
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGG-ATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|19934603|gb|BQ079633.1|BQ079633
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|19453094|gb|BM954504.1|BM954504
EST:     CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAATGCCGTTCGTACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttct ... tcactttcagGGATGAGCAGCTTTTGGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG