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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATTATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagaccatgcaccttgctagctacaactgcttattttttaaatttatatatacatatatgctgcaccttccaatgcttcacttggtgcttcttat...

Basic information

species Glycine max
transcript GLYMA06G11540.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 6
TATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATTATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagaccatgcaccttgctagctacaactgcttattttttaaatttatatatacatatatgctgcaccttc--caatgcttcacttggtgcttcttat--
 || || ||  | || ||||||||| | || ||||||||||| ||||| || || || |||||||| ||| ||||||||||| | || ||  | ||||||||   ||||   | || ||| | |  ||    |  | |  || ||| | | |    | |    || | ||  ||    |    || ||   |      |     
AATCAATTCCGCGGTCGGATCTCTCTTAGTTAGCTTCACTGTCTACATCATCCCCGCATTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGgt---tagatt-tccaacttccaaaatatctattttaaaattataattgtttcataaaaagcttgttacaattttagtataagtttacaaagaataattggaaa