Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag

Basic information

species Glycine max
transcript GLYMA06G08620.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g02530.3 (Oryza sativa), 5'ss of exon 7
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
||||| || ||| | ||||| ||||||||||||||||||||||| || ||||| || |||||||||||||||||||| || ||||||||||   || ||  |||       | |||||    |     |||| |  ||   || ||| | |||  | | | |  | | |||   ||| |  | |  |  ||  |  |    |                   
GCTGGCCTCTTTTTCTATGATATTTTCTGGGTTTTCTTCACTCCTGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAGgttagtgttctttataa-------gtgattttgactc----ttgttttgatacaaaatgtctttttctttttaca--aaaaaaggctaatctggttatccccttttttctgc-atag-----------------

upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g36070.2 (Oryza sativa), 5'ss of exon 8
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
   || || ||| | ||||| ||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| |||| ||                ||||||  | |   |      |   || | || ||||  || |   | |  |  ||||     |  | ||  | | ||| |    || |                   
AGCGGACTCTTTTTCTATGATATTTTCTGGGTCTTCTTCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAGgt-aagtattcctt------------gatttcactcttgttgcaatagccattcatttctatacctaatcaaaaaatacgtaaggtt--tccagtagttattttcgtctgtttct-------------------

upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G150251_T01 (Zea mays), 5'ss of exon 8
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
| ||| || ||||||||||||||||||||||| |||||||||||||| ||||| || || || ||||| ||||||||||| |||||||| |    | || |  |   ||      ||| |   |  | ||||  |    | | ||   |  || |  |  | |||  |    |   |  |    ||||     |  | | || ||  | |           
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTTGATGCTCCTATAAAGgtcagcactctttcatactgaacctttttttgttaataccattgtcagtcactcagttagttggttccatttttctcatcttg--atgcttcagctgatctggctttgtt-tggttatgtacag----------

upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaa--gttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
| ||| || ||||||||||||||||||||||| |||||||||||||| ||||| || || || ||||| || |||||||||||||||||     | | ||| ||| |||| | |   | | ||||  |     | | | ||       |||  ||    |||| ||   |        | |    |                                     
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaacttgg--tctttgttaataccattttcagttagttccatatgcttcagctgatctcgctttgcttggttatgtacag------------------------------------

upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
lower sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
|| || |||||| | ||||| || |||||||||||||| |||||||| |||||||| ||||| ||||| || ||||||||||| |||||||       |||     || |  | |                  |  ||| | ||| | |  ||| |    | |    |||    | ||| | | || | || |                            
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaaaagtacacaccata--------ccaaattgattctgatt-tgttcttagtcaatttttcagtaatctcattgttacatatttctttcag--------------------------

upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 8
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagttttttgctaa--tgaaatggagatttctgtttgtctttgtgtgaattttaattgtata--tttactatgat-atcagataagaaaaatgtaataaatctattcctaatattgtca---ttcaaattattttgcag
|| || || ||||| ||||| ||||||||||| |||||||||||||||||||| || |||||||| || || |||||||| || ||||| |  | |   | | |  ||| ||    ||    | |  |||   | |   ||  | || | |   | |  | | || |     ||||   ||| || |  || |||||  ||| |  | |   ||||| |  ||||||||
GCAGGACTTTTTGTTTATGATATTTTCTGGGTCTTCTTCACTCCAGTGATGGTCAGTGTTGCAAAGTCCTTCGATGCTCCTATTAAGgtcagttatccaggtcaactgagatattaatcctggatattctggtttttggttcaatttatttcgctctgttgtaattaatcattaagtttaatttactttat-tattctaaatgtaataacagttcaattctttttgcag

upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
lower sequence: EFJ18240 (Selaginella moellendorffii), 5'ss of exon 7
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
|| || ||||| || |||||||| |||||||| ||||||||||| |||||||| | |||||| || || ||||||||||| || ||||||   |  | |   | || |||| |   ||||  |  ||  |   || |                                                                                    
GCCGGGCTATTCGTATATGACATCTTCTGGGTATTCTTCACTCCTGTGATGGTCACCGTTGCGAAGTCCTTTGATGCTCCCATCAAGgtt---tgctctctcagtgcaatgcatccttct-ctaatccctccatgcag-----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185323|gb|HO030536.1|HO030536
EST:     TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAG                         CTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
genomic: TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagtttt ... tattttgcagCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: gi|254349304|gb|GR860102.1|GR860102
EST:     TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAG                         CTTTTATTCCCCACAGCAGATTCAGCAAGGCCA-TTTCAATGCTTGGCCTT
genomic: TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagtttt ... tattttgcagCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: gi|58024459|gb|CX711200.1|CX711200
EST:     TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAG                         CTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
genomic: TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagtttt ... tattttgcagCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: gi|254349303|gb|GR860101.1|GR860101
EST:     TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAG                         CTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
genomic: TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagtttt ... tattttgcagCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: gi|5342731|gb|AI795015.1|AI795015
EST:     TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAG                         CTTTTATTCCCCACAGCAGATTCAGCAAGGCCCATTT-CAATGCTTGGCCT
genomic: TCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagtttt ... tattttgcagCTTTTATTCCCCACAGCAGATTCAGCAAGGCC-ATTTTCAATGCTTGGCCT