1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTTGAATTTTGAAGTTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGgtttcaatgtttttgtcctagttttatgttagaaatagtcattggtgatgaatttaatcgggaaaatattggcattttacttacaaactttgatgcaaagctatcctcttcatggtgcag
species | Glycine max |
transcript | GLYMA06G04620.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAG GTTCTTGCNNNNNNNCCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCEST: gi|58024356|gb|CX711097.1|CX711097
genomic: GAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGgtttcaatgt ... catggtgcagGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC
EST: GAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAG GTTCTTGCNNNNNNNCCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCEST: gi|51334880|gb|CO978746.1|CO978746
genomic: GAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGgtttcaatgt ... catggtgcagGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC
EST: GAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAG GTTCTTGCNNNNNNNCCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCEST: gi|58021308|gb|CX708049.1|CX708049
genomic: GAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGgtttcaatgt ... catggtgcagGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC
EST: GAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAG GTTCTTGCNNNNNNNCCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC
genomic: GAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGgtttcaatgt ... catggtgcagGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGAATTTTGAAGTTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGgtttcaatgtttttgtcctagttttatgttagaaatagtcattggtgatgaatttaatcgggaaaatattggcattttacttacaaactttgatgcaaagctatcctcttcatggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA