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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGTACAAGAACGAGCACCAACAGTACCAAGAGGCTTGTCCAGCGAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgtttgtctgccacaagacgagcttattatatgatgggtttcaagttcaactttttgttagtttgtcataactcgactcattgtggcatcaag...

Basic information

species Glycine max
transcript GLYMA06G04620.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04620.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g09710.t01 (Vitis vinifera), 5'ss of exon 8
CTTTTGTACAAGAACGAGCACCAACAGTACCAAGAGGCTTGTCCAGCGAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgct----cgtttgtctgccacaagacgagcttattatat-gatgggtttcaagttcaactttttgttagtttgtcataactcgactcattgtggcatcaag
||| ||||  | |  ||||  |||||||| ||||| ||   | ||   ||||||| ||||||  |||||||||||||||| ||| | ||||| |||||||||||| |    |  |  | || ||||| |     |  || | | ||||  ||   | | |  |   | | |   ||   | |  ||   || |  |  |||    
CTTCTGTATGAAAGGGAGCGTCAACAGTATCAAGAAGCAATTGCAAATAATGTCTCTCCTTCAACTATATATGGTGCTGAACATCTATTACGCCTCTTTGgtatgatattcctctaatttgacacaataaatattatttgttttgatgaattcttattgcttcaaatggatcagttaggacacttct-ttcctattcacat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048020|gb|CA784634.1|CA784634
EST:     TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTG                         TTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGG
genomic: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgt ... aattttgaagTTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGG
EST: gi|192295596|gb|FG988170.1|FG988170
EST:     TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTG                         TTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGG
genomic: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgt ... aattttgaagTTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGG