1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTCTGACTAACCCAGGAAGATTGCGTCCCTGGGATGGGCCTTTCCTTTGCTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGgtattttgataattcttgcttgtttttatgtccattgatgtgttaagttatgcatgtgtataatttaattctatctttcaaccttttgctttcag
species | Glycine max |
transcript | GLYMA06G04210.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAG ATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTTEST: gi|192331603|gb|FK019964.1|FK019964
genomic: AAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGgtattttgat ... ttgctttcagATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
EST: CTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAG ATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTTEST: gi|15812519|gb|BI784794.1|BI784794
genomic: CTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGgtattttgat ... ttgctttcagATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
EST: CTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAG ATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
genomic: CTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGgtattttgat ... ttgctttcagATAGACTTAGCAGCGGGAGTGACTGATGAATTATCATGTACATTTGCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCTGACTAACCCAGGAAGATTGCGTCCCTGGGATGGGCCTTTCCTTTGCTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGgtattttgataattcttgcttgtttttatgtccattgatgtgttaagttatgcatgtgtataatttaattctatctttcaaccttttgctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG