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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGgtttgtctgttgaacttcctttttttttttctgctggacttttcacttttgcggtatccttacgtcttcttgtattgactagcag

Basic information

species Glycine max
transcript GLYMA06G02070.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G02070.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 9
ATATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGgtttgtctgttgaacttcctttttttttttctgctggacttttcacttttgc----ggtatccttacgtcttct-tgtattgactagcag
 ||| | || || |||||||| || |||| |||||||||  ||||  |||| ||||||||||||||||| |||||| ||    || |    |||| |||  |  |   |       |||| || |    | |        | ||| | || |||  || ||||
GTATCTGGCTCATGGGACAGCGACAGATTACATGTATGATGTTGTAAGGGTGCCCATGGCTTTCACCTTCGAGgttcgtgaaatgcagagtctttctttactgttatcgattgcagcactcttacatatgatggttccttgacttttatgcattccct-gcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11411782|gb|BF423724.1|BF423724
EST:     ATGGCTTTCACCTTTGAG                         ATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAAT
genomic: ATGGCTTTCACCTTTGAGgtttgtctgt ... tgactagcagATATATGGAGATGGAACAGCCTCATCAAGAGATTGCTTCAAAATGTTCAAT