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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGGCCCTGGAAAAACCCTGATATATTCAAGgttatatgctgttcttggaaaaaccctgatacattcaaggtacctgcactatgtcagtttgacttgtaataggctgacagttgattgcatgtgaattttccacag

Basic information

species Glycine max
transcript GLYMA06G01260.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01260.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 9
TGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGGCCCTGGAAAAACCCTGATATATTCAAGgttatatgctgttcttggaaaa---accctgatacattcaaggtacctgcactatgtcagtttgacttgtaataggctgacagttgattgcatgtgaatt-ttccacag-------------------------------------------
|||||||||||||||||| || |||||||| || |||| ||||||||||||||||||  | |||||||| || || ||||| ||||| |||||||| ||||||  || |||  || |||      |   | ||   ||  |  ||  | |  |   | || |    ||||  |   || |   || ||| |||| |  |  ||  |  |                                           
TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGGTTGCCTCCGGTCTGATAAGGGACCATGGAATAACCCAGATATATTGAAGgttccatactggactaggattttttatttttattttttttaaataaatcccatgattaagatgttattgt--ttcccttatccttcatttcatgagcttcattttattgcttataatgagaaacaattgtgtgcatgtgcaatttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193582078|gb|FK536947.1|FK536947
EST:     TGGAAAAACCCTGATATATTCAAG                         ATGGTTCTCAATGGTGGAGCATGGCGGTCAAAGCAAGTTGTAAAAGTTCTT
genomic: TGGAAAAACCCTGATATATTCAAGgttatatgct ... ttttccacagATGGTTCTCAATGGTGGAGCATGGCGGTCAAAGCAAGTTGTAAAAGTTCTT
EST: gi|12490007|gb|BG043528.1|BG043528
EST:     CCCTGATATATTCAAG                         ATGGTTCTCAATGGTGGAGCATGGCGGTCAAAGCAAGTTGTAAAAGTTCTT
genomic: CCCTGATATATTCAAGgttatatgct ... ttttccacagATGGTTCTCAATGGTGGAGCATGGCGGTCAAAGCAAGTTGTAAAAGTTCTT
EST: gi|208304061|gb|GE103834.1|GE103834
EST:     GTTGCCTTAGATCTGATAAAGGGCCCTGGAAAAACCCTGATATATTCAAG                         ATGGTTCTCAATGGTGGAGCATGGCGGTCAAAGCAAGTTGTAAAAGTTCTT
genomic: GTTGCCTTAGATCTGATAAAGGGCCCTGGAAAAACCCTGATATATTCAAGgttatatgct ... ttttccacagATGGTTCTCAATGGTGGAGCATGGCGGTCAAAGCAAGTTGTAAAAGTTCTT