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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCGgtacatctcttttctgtccattatcaatatcatggatagcagctcttgcattagcaccatgaacttgtaaaatggtttaatgcatgttgtctctggcttaatag

Basic information

species Glycine max
transcript GLYMA05G36050.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36050.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 8
GAAATTAGAAGGCGTCGTCTCAAAGTTGCAGTTGTAGGAATCCCCAAAACCATAGATAATGACATCCCGgtacatctcttttctgtcc--attatcaatatcatggatagc-agctcttgcattagcaccatgaacttgtaaaatggtttaatgcatgttgtctctggcttaatag---------------------------------------------------
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GAAATTCAAAGGCGTGGTCTAAAAGTTGCAGTTGCTGGAATTCCCAAAACAATTGATAATGACATTCCGgtacatctctttgtttccttaattgctgattataggaccggttggatattacacctgatttattgcatagatataaattcaaaaacaatttttttcctattttttattgaccaattctctttttagttgatttttacctccgactattgctggtacag