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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCTGACATGTCAGCCATGCACCATGACACAAGTTCTGATCTGAAAGTAGTTGGAAACAAATTAAAGGATATATTAGAGgtatgcatgctcttctacccttgttggaatatgactatcatcatgtctcacatcatcctataaattgcttttccttgaattgataagataaaccaaacta...

Basic information

species Glycine max
transcript GLYMA05G35890.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35890.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G856653_T01 (Zea mays), 5'ss of exon 8
GACGCCTGACATGTCAGCCATGCACCATGACACAAGTTCTGATCTGAAAGTAGTTGGAAACAAATTAAAGGATATATTAGAGgtatgcatgctcttctacccttgttggaatatgactatcatcatgtctcacatcatcctataaattgcttt-tccttgaattgataagataaaccaaacta---
|||||| || |||||||||||||||||||||||      |||||| |||    | |||   ||  | ||||| ||  | | ||||    || |     || | ||||  || | ||   | ||  ||    | || ||| |  |    | ||  | | | | ||| || | |    |  | |    
GACGCCAGATATGTCAGCCATGCACCATGACACCTCACATGATCTCAAACACCTGGGAGCTAAGCTGAAGGACATTCTTGGGgtaatggtgat-----acacatgttcaaaaaagagggt-attttgctagatataatcttcaatgacgattggttccttatttgctatgtttctgcttattctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888386|gb|BQ741599.1|BQ741599
EST:     CAAGTTCTGATCTGAAAGTAGTTGGAAACAAATTAAAGGATATATTAGAG                         ATCTCTAACACATCCCTAAAAATGAGGAAGATTGTTGTTGAACTGTGTGAC
genomic: CAAGTTCTGATCTGAAAGTAGTTGGAAACAAATTAAAGGATATATTAGAGgtatgcatgc ... tttttgtcagATCTCTAACACATCCCTAAAAATGAGGAAGATTGTTGTTGAACTGTGTGAC
EST: gi|16345680|gb|BI971275.1|BI971275
EST:     CAAGTTCTGATCTGAAAGTAGTTNNNNACAAATTAAAGGATATATTAGAG                         ATCTCTAACACATCCCTAAAAATGAGGAAGATTGTTGTTGAACTGTGTGAC
genomic: CAAGTTCTGATCTGAAAGTAGTTGGAAACAAATTAAAGGATATATTAGAGgtatgcatgc ... tttttgtcagATCTCTAACACATCCCTAAAAATGAGGAAGATTGTTGTTGAACTGTGTGAC