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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGgtatattttatggctgttgttttaaactgtgatatagaatattcttagttcttcatcccaaaacctaatcataaatttctttgacgttattgag

Basic information

species Glycine max
transcript GLYMA05G34790.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 9
GTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGgtatattttatggctgttgttttaaactgtgatatagaatattcttagttcttcatcccaaaacct-----aatc--ataaatttctttgacgttattgag--------------
||| |||||||||||  ||||||||   || ||||| ||||| || ||||||||||||||||||||  || | || ||  ||    || |  |   || |||   |  || ||  |   | |   |     ||||   |  ||  |||     || || |               
GTCGATTTTTGATTTCCAATCTATCCAAAAGCTGCTCTCATCACCAAAATTCACATTCTGgtatatagtaggcctcttagttggttctttattgctgagtatatatttttttttttggaatatttttttggaatctggtggataccttaacttttgttcaatgttatttttaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347113|gb|GR856783.1|GR856783
EST:     GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG                         TTATGATGCACTACATGGGGTTGGTGGAGCAT--GCAAAGAGTATATTTGT
genomic: GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGgtatatttta ... cgttattgagTTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATATTTGT
EST: gi|193582060|gb|FK536943.1|FK536943
EST:     GA-TTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG                         TTATGATGCACTACATGGGGTT
genomic: GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGgtatatttta ... cgttattgagTTATGATGCACTACATGGGGTT
EST: gi|6567342|gb|AW234953.1|AW234953
EST:     GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG                         TTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATATTTGT
genomic: GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGgtatatttta ... cgttattgagTTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATATTTGT
EST: gi|193696490|gb|FK639774.1|FK639774
EST:     GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG                         TTATGATGCACTACATGGGGTT
genomic: GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGgtatatttta ... cgttattgagTTATGATGCACTACATGGGGTT
EST: gi|208318113|gb|GE110636.1|GE110636
EST:     GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG                         TTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATATTTGT
genomic: GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGgtatatttta ... cgttattgagTTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATATTTGT
EST: gi|10845957|gb|BF068962.1|BF068962
EST:     GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTG                         TTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATATTTGT
genomic: GATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGgtatatttta ... cgttattgagTTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATATTTGT
EST: gi|193710091|gb|FK645155.1|FK645155
EST:     CATCTCCTAAATTCACATTCTG                         TTATGATGCACTACATGGGGTT
genomic: CATCTCCTAAATTCACATTCTGgtatatttta ... cgttattgagTTATGATGCACTACATGGGGTT