Sequence
atgc intronic sequence ATGC exonic sequenceGGAGAGATGCAACAACTTCGGGACAAGCTTGCTATAACTGAGCGCACTGCAAAGTCTGAAGCACAGTTAAAAgtaataatctggtttttcagcccccatgtattagcttaggagattacttctgctgttactcaaggtaaaccttttacaattttcag
Basic information
species | Glycine max |
transcript | GLYMA05G34560.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G008556_T01 (Zea mays), 5'ss of exon 8
GGAGAGATGCAACAACTTCGGGACAAGCTTGCTATAACTGAGCGCACTGCAAAGTCTGAAGCACAGTTAAAAgta-ataatctggtttttcagcccccatgtattagcttaggagattacttctgctgttactcaaggtaaaccttttacaattttcag---------------------------------------------------------------------
|| ||||||||||||||||| ||||||||||| || || || || || ||| |||||||| || | || ||| |||| ||||| | | | || | ||||| || || || || || | | ||||| ||||| |
GGGGAGATGCAACAACTTCGTGACAAGCTTGCCATTACAGAACGTACAGCACGATCTGAAGCTCAACTGAAGgtacataacttggttgtgtt-ctgctgcgtgcttgcttactagctttctact--tgacatatagatggaacctgttacatcctatgtattataatgtaatctaacatttgttaaatgagtcagttcatatgagctaaacttctgcaccttactcag
upper sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 8
GGAGAGATGCAACAACTTCGGGACAAGCTTGCTATAACTGAGCGCACTGCAAAGTCTGAAGCACAGTTAAAAgtaa-taatctggtttttcag--cccccatgtattagcttaggag-attacttctgctgttactcaaggtaaaccttttacaattttcag-----
|| || ||||| ||||| ||||||||||||||||||| || | |||||||| ||||||||||| || ||||||| |||| || |||||||| ||||| | |||| | | ||| ||| | || || | ||||| | | | | |
GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCAAAATCTGAAGCACAATTGAAAgtaaataatttgctttttcagaatatacatgtctaagctctgcaatattttccacatggttcttgaaaatagaacttttgaattgtactgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8283242|gb|BE020803.1|BE020803EST: ACAAGCTTGCTATAACTGAGCGAACTGCAAAGTCTGAAGCACAGTTAAAA GAAAAATATCAATTAAGGCTTAAAGTGCTACAGGAGAGTTTGAGAGAAACT
genomic: ACAAGCTTGCTATAACTGAGCGCACTGCAAAGTCTGAAGCACAGTTAAAAgtaataatct ... caattttcagGAAAAATATCAATTAAGGCTTAAAGTGCTACAGGATAGTTTGAGAGAAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGAGATGCAACAACTTCGGGACAAGCTTGCTATAACTGAGCGCACTGCAAAGTCTGAAGCACAGTTAAAAgtaataatctggtttttcagcccccatgtattagcttaggagattacttctgctgttactcaaggtaaaccttttacaattttcag
- - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC