Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTACAGGGCAAGTTGCTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgagttgataatgacattatagatatatatgttgttttcaattgaactttttatttcttatacaaaatgttcctttcag

Basic information

species Glycine max
transcript GLYMA05G34360.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34360.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 8
GTTGCTACAGGGCAAGTTGCTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgag---------ttgataatgacattatagatata-tatgttg---ttttcaattgaac----tttttatttcttatacaaaatgttcctttcag---------------------------------------------
||||| ||||| ||||||||||||||||| ||||||  ||| |||||||||||||| ||||| |||||||| ||         || ||  |  ||| | | |  || | |  |    |||| |||    |     ||||   | | || | ||  | | |||  ||                                             
GTTGCAACAGGACAAGTTGCTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagtcccatttatcttagcatgaaaaagttactctactccattttttaatcatgcgttgcttttgaatttgatcccaatggatgcttagagaatttgttatctagttttatttgttggctattttctttcctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207734720|gb|GD710151.1|GD710151
EST:     CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAG                         GTTTCTCTAGCATCTGAGTTTATG
genomic: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgagttgat ... ttcctttcagGTTTCTCTAGCATCTGAGTTTATG
EST: gi|192296647|gb|FG991215.1|FG991215
EST:     CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAG-TATCTGAGAAG                         -TTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACA
genomic: CTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgagttgat ... ttcctttcagGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACA