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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCATCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTATTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTgtaagttcaggatactcatttctgtaatctgagttgaagttcagttgctgtcacactaatatgttttatcatatcatcccatttccacagttggaatatt...

Basic information

species Glycine max
transcript GLYMA05G34180.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 2
CCATCATCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTATTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTgtaagttcaggatactcatttctgtaatctgagttgaagttcagttgctgtcacactaatatgttttatcatatcatcccatttccacagttggaatatt------
 |  |  || |||||  | ||  |  ||||||||||||||||| | || |||||| |||| ||||||||||||  ||| ||||| |  || ||||| ||||||||      ||| |  ||   | | | |||||| |       |||   | ||  ||   | | |     |   |  |  ||   |   ||     | |      
TCCACGCCGGCCTGAGCTAAGACTTGTTTTGATGAGTGCAACCCTTAACGCTGAGTTATTCTCTTCATACTTTGGTGGAGCTCCCATGATACATATACCTgtaag------atatttcttaaggcattttgagttcactcgtctttgtctttactttatcctttctgcgtctgcaactctgttggaatttttaatgaagtcacaat

upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 8
CCATCATCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTATTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTgtaag-----ttcaggatactcatttctgta-atctgagttgaagttcagttgctgtcacactaatatgttttatcatatcatcccatttccacagttggaatatt
 |  | ||| |||||  ||||| | || ||||||||||||||| | |||||||||||||| ||||||||||||  ||| || || |  || ||||| ||||||||     |||   ||||   |||   |  ||     |     || |||   |    || |  |   |  |    |  ||||   | | ||  |||  |     
TCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatattttcttaatacctttttgcattcattcttttctgcttttagtcaatag-gcattggttcatacttcactcccatctt-tcttcattgtttcag----

upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 7
CCATCATCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTATTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTgtaagttcaggatactcatttctgtaatctgagttgaagttcagttgctgtcacactaatatgttttatcatatcatcccatttccacagttggaatatt-------
 | || ||| || || |||||| ||||| |||||||||||||  | ||||||||||| ||||| || ||||||  ||||||||||| ||| |||||||||||||||| | ||| | ||||    | || ||  ||       |||  |        | || | |||   || ||||    |      ||| ||||||  |       
TCCTCGTCGGCCAGAATTGAGGCTGATTCTGATGAGTGCAACTCTTAATGCTGAGCTTTTTTCCTCCTACTTTGGTGGTGCTCCAAGTATCCATATTCCTgtaagtttaagatgc-catt---atcatttgcattaggcactagtccc--atgttttcatttctttcccca-atcaatgaagagatccaggtggaattgtcactcac