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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATAAACCATTAATTCAAACCATCAGCAGTCGCCAAAAATTGGGTCCTGCAGGCCTTGCTTTGCATTATGCTAATATAGTGCTCCAAATTGATACTCTTgtaagtgtttcttctttatttagtctatttcataatttggtttagtacaaacagtatgctttatctatatctttttggttaaatgttcaactagagtaat...

Basic information

species Glycine max
transcript GLYMA05G33040.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 8
CCATAAACCATTAATTCAAACCATCAGCAGTCGCCAAAAATTGGGTCCTGCAGGCCTTGCTTTGCATTATGCTAATATAGTGCTCCAAATTGATACTCTTgtaagtgt-----ttcttc------tttatttagtctatttcataatttg--gtttagt--acaaacagtatgctttatctatatctttttggttaaatgttcaactagagtaat------------------------------------
|  | ||     |    || |   ||     |   | | |||||| || ||||||||||| |||||||||||||||||  |    || ||||| | ||||||||||        |||||      | |  |    |||| || | ||| |  | | | |     |||| | | | | | | ||||   ||    ||| | | |||||  |||  |                                    
CAGTGAAGAGCCACAAGAACCTGCCAAACACCATAATAGATTGGGACCAGCAGGCCTTGCATTGCATTATGCTAATATCATCAATCAGATTGACAATCTTgtaagtccacatactcttctagagatcttatcgaactatatcgttattagaagataacttggtgaacattgtacatcaaccatattcattgcaataagtctccaacttcagttttttcacaatattttaataaggattggtcaattggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208336629|gb|GE135957.1|GE135957
EST:     CCTTGCTTTGCATTATGCTAATATAGTGCTCCAAATTGATACTCTT                         GTTGCCAGATCCAGTTCTATGCCTGCAAATACAAGGGATGCATTGTATCAG
genomic: CCTTGCTTTGCATTATGCTAATATAGTGCTCCAAATTGATACTCTTgtaagtgttt ... atgctttcagGTTGCCAGATCCAGTTCTATGCCTGCAAATACAAGGGATGCATTGTATCAG