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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCAAACCCAGATTGTGCATCAGTAGATACAACGATACTGGATTCTCTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtgacatttatttttccaattttgcaggcagtctcctaagtcttatctttttgtactgactactgagtgctgacttttattgtttatgcag

Basic information

species Glycine max
transcript GLYMA05G32930.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 8
ACTCCAAACCCAGATTGTGCATCAGTAGATACAACGATACTGGATTCTCTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtgacatttatttttccaattttgcaggcagtctcctaagtcttatctttttgtactgactactgagtgctgacttttattgtttatgcag
|||   ||||||||||||||  || |||| ||||| || || ||| |  | ||||| ||||||||||| |||||||| ||| |||||||  | |||||||||| ||  |  |||      |   |    | | || ||   ||  | | | ||     | |    |||  | | | || |   |       
ACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTGACAAAGgtgccaactgatttctgtcctcatctttgactatcgtactgctactttatatgctacaagtttaaagtcttcattattgtaaatag-----

upper sequence: GLYMA05G32930.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
ACTCCAAACCCAGATTGTGCATCAGTAGATACAACGATACTGGATTCTCTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtgacatttatttttccaattttgcaggcagtctcctaagtcttatctttttgtactgactactgagtgctgacttttattgtttatgcag
||||||||||| || || ||| |  | || ||||| || || ||| | || || || |||||||| ||||| || |||||||||||||| ||||||||||||||   |||| ||    ||           | |   | |    |   |||   |    ||  || |                        
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaatgcatt-tttttcatgatgaaatatttaacatcatctgttgggcag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312688|gb|FK004376.1|FK004376
EST:     GCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAG                         ATGGGTATGTAGTGGCTTGCATGGATGTTTTGCAGATAACTCATGCTGCAA
genomic: GCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtgacattta ... gtttatgcagATGGGTATGTAGTGGCTTGCATGGATGTTTTGCAGATAACTCATGCTGCAA
EST: gi|192312689|gb|FK004377.1|FK004377
EST:     GCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAG                         ATGGGTATGTAGTGGCTTGCATGGATGTTTTGCAGATAACTCATGCTGCAA
genomic: GCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtgacattta ... gtttatgcagATGGGTATGTAGTGGCTTGCATGGATGTTTTGCAGATAACTCATGCTGCAA