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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATTCAGgtaagaagatatatcagtttaacaaacatcgaaaatagtgtttgcatatgatattgttgggcatctcatggatgattttgaaaactttttgccctttatt...

Basic information

species Glycine max
transcript GLYMA05G32100.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 7
GGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATTCAGgtaagaagatatatcagtttaacaaacatcgaaaatagtgtttgcatatgatattgttgggcatctcatggatgattttgaaaactttttgccctttatt
|||  |   | |||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||  |||| ||||| || |||||||||||||  | | || | | | | |  |             |  |   || | |||    ||      | ||    ||||||  | | |    |         
GGTTTCTGTATCACAGAAAGTTCCTGAAGATGGTTGGACTATGCAAGATGGAACTCCTTGGCCTGGAAACAATGTCCGGGACCATCCAGGAATGATTCAGgtaatgata-atgtgattatgatga------------ttcctcatatgtcatagaactgaa-gcttaataagagattttttacaatggaag---------

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G39350.1 (Arabidopsis thaliana), 5'ss of exon 7
GGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATTCAGgtaagaagatatatcagtttaacaaacatcgaaaatagtgtttgcat-------atgatattgttgggcatctcatggatgattttgaaaactttttgccctttatt--------------------------------------------
||| || || ||||| || || |||||||| || ||||| ||||||||||| ||||||||||||||||| || ||  | || |||||||| |||||||||||||  |    | |   || || |  ||   ||||    ||||   |       |   | || |   | ||||  |  ||     |||  ||| |  |  ||  ||                                             
GGTTGCTACTGCACAGAAAGTGCCTGAGGAAGGTTGGACTATGCAAGATGGAACTCCTTGGCCTGGAAACAACGTCCGTGACCATCCTGGAATGATTCAGgtaatgatgagt-ttgattgaataggcaaaaaaaaagcggtttttgtcctcttcactttgttttcctggatctgttaaattggaatgagcactcta-gttctcaatatatcttcagaccgaagcctttttaagagattttgtaaatgacag

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G09870.1 (Arabidopsis thaliana), 5'ss of exon 7
GGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATTCAGgtaagaagatatatcagtttaacaaacatcgaaaatagtgtttgcatatgatattgttgggcatctcatggatgattttgaaaactttttgccctttatt--------
 || || || ||||| || || ||||| || || ||||| |||||||| || ||||||||||| || ||||| ||| | ||||| ||||||||||| ||||| ||| | | |    |  | | | |  ||     |  |  ||  || |||| |   ||   |  ||     | |  |    || || |||   |||  |        
AGTTGCGACTGCACAGAAAGTGCCTGAAGAAGGTTGGACTATGCAAGACGGTACTCCTTGGCCCGGTAATAACGTGCGAGATCACCCTGGCATGATCCAGgtgagatgctttga-ggcgttagatatttc-----tttttgttctatgtgatgt--gtgtatacttccaaacttacctgtttaatttcttgatttttcctgtaaaaag

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 5'ss of exon 7
GGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATTCAGgtaagaagatatatcagtttaacaaacatcgaaaatagtgtttgcatatgatattgttgggcatctcatggatgattttgaaaactttttgccctttatt
 || ||||||||||| || || ||||||||||| ||||| |||||||| || || |||||||| || |||| |||| | ||||||||||||||||||||||| ||      |   | |    |  |  ||  ||| ||  ||   || || | |  ||    || | ||     | ||||    ||| ||          
AGTAGCAACAGCACAGAAAGTGCCTGAGGATGGTTGGACTATGCAAGACGGTACACCTTGGCCCGGTAATAGTGTGCGAGATCATCCTGGCATGATTCAGgtgagt-----ttcaaatgcttcttatttctgaaa-agccttcttatgtgttgtccttcaaaatttaatta--tactttgttttcttgttaaag------

upper sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 8
GGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATTCAGgtaagaagatatat--cagtttaacaaacatcgaaaatagt--gtttgcatatgatattgttgggcatctcatggatgattttgaaaactttttgccctttatt
 ||  | |  |||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||||||| |||||  |  ||||||||||| |||| ||||| |  |  ||| |  |  |||  |||  |  |       |  |||  ||    |  |||||||  ||   || | |  | || ||    |  ||    |    
AGTTTCCATGGCACAAAAGGTTCCTGAGGAAGGCTGGACAATGCAGGATGGAACTCCATGGCCTGGAAACAATGTTCGCAATCATCCTGGCCTGATCCAGgtgatgacttatctttccattttgcaagaactgtcttctcttggttgtcacggaaccttgttgga-attgaataggttctgttaaatgtatcatgaatgtg---