Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACATGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcatatatatgttgcttaatcattcattccaagctctatctcttatttttagttttttaaagactcaaatgagtttatggcttcaacag

Basic information

species Glycine max
transcript GLYMA05G31450.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31450.4 (Glycine max), 5'ss of exon 5
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 5'ss of exon 6
CAACACATGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcatatatatgttgcttaatcattcattccaagctctatctcttatttttagttttttaaagactcaaatgagtttatggcttcaacag
 ||||| |||||||| || || || ||||| || |||||||||||  | |||||||| ||||| ||||||||  ||||| | ||||||||||||   |||||||||  |   |  |||  |||   |   | || |      ||   | | ||||  ||||||  |   |  |||   ||      ||||    
TAACACTTGTGAGGACTCTCTCTTGGCTGCACCAATTATCTTGGATCTTGTCCTTCTCGCTGAACTCAGCACCAGAATCCAATTTAAAGCTGAAGGAGAGgtttgtattccgttagttagttaccaagaaactcgag-----attggtgagtttt--tttttttcatgtttgaatctattctc--tttcag---

upper sequence: GLYMA05G31450.4 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 8
CAACACATGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcatatatatgttgcttaatcattcattccaagctctatctcttatttttagttttttaaagactcaaatga-gtttatggcttcaacag
|||||| || ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| || ||| || | |||||||||   ||||| |||  | | | ||   | | ||    |  ||   ||| |   | |||   | |    |  || || ||| | || ||| |    | ||    
CAACACCTGCGAGGACTCACTCTTAGCTGCTCCCATCATCTTGGATTTGGTCCTTCTTGCTGAGCTCAGCACCCGCATCCAGCTCAAAGCTGAAGGAGAGgtctgttttct-tctgcatccttatgggaccctctt-gctttggtttttaccatca--catggaatgattcataggatgttcaattttgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269143|gb|CA820206.1|CA820206
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|12688993|gb|BG155329.1|BG155329
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|17020881|gb|BM091915.1|BM091915
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193637582|gb|FK579495.1|FK579495
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|14999700|gb|BI320514.1|BI320514
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193456225|gb|FK423041.1|FK423041
EST:     TTCTTGCTGAGCTCAGCACTCGAATCGAAGTTTAAAGCTAGAAAATGAAG                         GGAAAATTCCACTCATT
genomic: TTCTTGCTGAGCTCAGCACTCGAATCGA-GTTTAAAGCT-GAAAATGA-Ggtttgtcata ... gcttcaacagGGAAAATTCCACTCATT
EST: gi|22931708|gb|BU548847.1|BU548847
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|10231949|gb|BE800837.1|BE800837
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTNTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|13790509|gb|BG653100.1|BG653100
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193531203|gb|FK486268.1|FK486268
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATT
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATT
EST: gi|9204909|gb|BE331133.1|BE331133
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|151406372|gb|EV276187.1|EV276187
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|10253117|gb|BE820883.1|BE820883
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|208284958|gb|GE086934.1|GE086934
EST:     GAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: GAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|15285788|gb|BI469679.1|BI469679
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|8669934|gb|BE191041.1|BE191041
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|10847107|gb|BF069873.1|BF069873
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTNTAAAGCTGAAAATGAN                         GGAAAATTNCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTTGAC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCT-GAC
EST: gi|27425861|gb|CA937381.1|CA937381
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193302180|gb|FK267351.1|FK267351
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCAT
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCAT
EST: gi|193620855|gb|FK569965.1|FK569965
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|12688896|gb|BG155232.1|BG155232
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|120492376|gb|EH220543.1|EH220543
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|6913141|gb|AW394671.1|AW394671
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|22525838|gb|BU084649.1|BU084649
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|6718757|gb|AW306404.1|AW306404
EST:     CCTTCTTGCTGAGCTCAGCACTCGAAATCGAGTT-AAAGCTGAAAATGAG                         GGAAGATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: CCTTCTTGCTGAGCTCAGCACTCGAA-TCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|207756425|gb|GD729564.1|GD729564
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|208031199|gb|GD829797.1|GD829797
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|208178267|gb|GD978780.1|GD978780
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|22522672|gb|BU081483.1|BU081483
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|20498695|gb|BQ273625.1|BQ273625
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|7283317|gb|AW595925.1|AW595925
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTNTAAAGCTGANAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193479251|gb|FK446724.1|FK446724
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|120495709|gb|EH223876.1|EH223876
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|13788713|gb|BG651304.1|BG651304
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|120529467|gb|EH257601.1|EH257601
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|192305244|gb|FG997524.1|FG997524
EST:     CTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: CTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193360438|gb|FK328078.1|FK328078
EST:     CCTTCTTGTCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: CCTTCTTG-CTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|208206425|gb|GE005436.1|GE005436
EST:     TTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193404431|gb|FK365340.1|FK365340
EST:     CCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAAG                         GGAAAATTCCACTCATTCCA
genomic: CCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGA-Ggtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCA
EST: gi|15664440|gb|BI701811.1|BI701811
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|120493361|gb|EH221528.1|EH221528
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|208029216|gb|GD830992.1|GD830992
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193530412|gb|FK486611.1|FK486611
EST:     CCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAAG                         GGAAAATTCCACTCATT
genomic: CCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGA-Ggtttgtcata ... gcttcaacagGGAAAATTCCACTCATT
EST: gi|193479156|gb|FK448085.1|FK448085
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|17021005|gb|BM092039.1|BM092039
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|20448537|gb|BQ252661.1|BQ252661
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|192305229|gb|FG997523.1|FG997523
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|20812941|gb|BQ297419.1|BQ297419
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTC
EST: gi|10234327|gb|BE803215.1|BE803215
EST:     GCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|15285651|gb|BI469542.1|BI469542
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|192300396|gb|FG987883.1|FG987883
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|14008873|gb|BG725477.1|BG725477
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACN
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGAC-
EST: gi|193407431|gb|FK370259.1|FK370259
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCT
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCT
EST: gi|15287101|gb|BI470992.1|BI470992
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|207783762|gb|GD756000.1|GD756000
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCA
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCA
EST: gi|9986213|gb|BE660321.1|BE660321
EST:     CCTTCTTGCTGAGCTCAGCACTNNGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTTCACTTCATTTCCACCCAGTTTGCGAACCATTCTTAGNTACTT
genomic: CCTTCTTGCTGAGCTCAGCACTC-GAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACT-CATT-CCACCCAGTT-GCGA-CCATCCTTAGTTACCT
EST: gi|120496079|gb|EH224246.1|EH224246
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|17964415|gb|BM271150.1|BM271150
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|5677640|gb|AI938770.1|AI938770
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|15203180|gb|BI425948.1|BI425948
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|10231153|gb|BE800100.1|BE800100
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCTACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|9902218|gb|BE611186.1|BE611186
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|12688968|gb|BG155304.1|BG155304
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|192301389|gb|FG994713.1|FG994713
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|208042232|gb|GD839510.1|GD839510
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|120495212|gb|EH223379.1|EH223379
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|208143541|gb|GD943329.1|GD943329
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193345988|gb|FK310796.1|FK310796
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACC-AGTTG
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTG
EST: gi|193647841|gb|FK595714.1|FK595714
EST:     TTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|17021564|gb|BM092598.1|BM092598
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|15200236|gb|BI424244.1|BI424244
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|7234796|gb|AW570129.1|AW570129
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|193594921|gb|FK546346.1|FK546346
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|22933777|gb|BU550916.1|BU550916
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|120492865|gb|EH221032.1|EH221032
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|6964194|gb|AW432887.1|AW432887
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|10234429|gb|BE803317.1|BE803317
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|7029141|gb|AW458924.1|AW458924
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|10231383|gb|BE800271.1|BE800271
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
EST: gi|9204546|gb|BE330770.1|BE330770
EST:     TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAG                         GGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC
genomic: TCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcata ... gcttcaacagGGAAAATTCCACTCATTCCACCCAGTTGCGACCATCCTTAGTTACCTGACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACACATGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTCAGCACTCGAATCGAGTTTAAAGCTGAAAATGAGgtttgtcatatatatgttgcttaatcattcattccaagctctatctcttatttttagttttttaaagactcaaatgagtttatggcttcaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA