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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGACTGAGTGGGAAATAATTCTTTGCTCATCAACTACCATGGATTTAGTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAGgtatttactctctagtttttagccaatgtaatcttttttcttatttgttttaattggtgattgttttggagaatcacaaagtttactgctatttggacttcaagcgctattaaatctaagttattggatgggcttgctgtatgacatgttggtatcattttatgtacag

Basic information

species Glycine max
transcript GLYMA05G30980.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335756|gb|GR847284.1|GR847284
EST:     GTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAG                         ATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAG
genomic: GTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAGgtatttactc ... ttatgtacagATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAG
EST: gi|51336496|gb|CO980362.1|CO980362
EST:     GTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAG                         ATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAG
genomic: GTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAGgtatttactc ... ttatgtacagATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAG
EST: gi|8284179|gb|BE021738.1|BE021738
EST:     GTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAG                         ATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAG
genomic: GTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAGgtatttactc ... ttatgtacagATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAG
EST: gi|254335755|gb|GR847283.1|GR847283
EST:     GTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAG                         ATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAA-G
genomic: GTATGGGCGCAGGTTATAAGTGATCCATTTCTAAGGCGGCTTATTCTAAGgtatttactc ... ttatgtacagATTCATATTCTGCCGATCCGTGATATCTTTTTTCTGCCCACCTGAGGAAAG