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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGgtaatgagactgggctgctactttttcatttgctcattatgaatgtcataaccctcatactgtggatgagttgtttattacttatatgtatgtattgatc...

Basic information

species Glycine max
transcript GLYMA05G30770.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30770.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G028307_T01 (Zea mays), 5'ss of exon 7
GGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGgta--atgagactgggctgctactttttcatttgctcattatgaatgtcataaccctcatactgtggatgagttgtttattacttatatg-tatgtattgatc
    ||  |||| ||||| | ||| || |  |  || ||    ||||  || ||||| || || |||||||| |||||||||||||| ||||||||| |||  ||   |||   |    |    |  | ||  || | ||   ||||   | |     ||| |  |    |||  ||  | ||  |   |||  |      
TTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAAgtatgatttaactctacgttaagaaataaaattaatcttgattgttgtctggatctaatgacttttaaca--ttgaataaaattttcacaatattcaggaga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347895|gb|BI973490.1|BI973490
EST:     TTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG                         GATCAAATGAAGGTCCACACAGGTTTAGTAAACTCACTCTAGAAGAAAAAA
genomic: TTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGgtaatgagac ... ctatctgtagGATCAAATGAAGGTCCACACAGGTTTAGTAAACTCACTCTAGAAGAAAAAA