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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTTGTCTCGCACAAAGgtaatgtaatcttgttaattgttatttatgttaggcactcacatttttagacattttccttggaaaaaaaggtctattattcttacggaactgcttctcatgacag

Basic information

species Glycine max
transcript GLYMA05G30230.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30230.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G370162_T02 (Zea mays), 5'ss of exon 7
AACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTTGTCTCGCACAAAGgtaatgtaa--tcttgttaattgtta--tttatgttaggcactc-acat--ttttagacattttccttggaaaaa-aaggtctatt--attcttacggaactgcttctcatg-acag
 || | |||| |||| || | ||| || || ||| | ||||||||||||||||| |||||||| ||||| || |||||||||||  | || || |  |||||||||| |  ||||  | | | | |   ||   || |   ||| || |  |||   | |  ||  ||| ||  |  | ||  |||    | ||||   | |      | || ||||
GACAGCACAGCGAATCGTTCAAGCATCAGACCCTTTACAGTCAATGCAGGAAATCAATCAAAATTTCCCAAGTATAGTTTCTTCACTATCACGAATGAAGgtaatgttacatctttctcactttaaagcttgcctttgtttctctactttatttccaatacattaattgaaattatgaagtggattcggctgttacaacaatatcatgcttgtacag

upper sequence: GLYMA05G30230.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G71220.1 (Arabidopsis thaliana), 5'ss of exon 7
AACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTTGTCTCGCACAAAGgtaatgtaatcttgttaattgttatttatgttaggcactcacatttttagacattttccttggaaaaaaaggtctattattcttacggaactgcttctcatgacag
||| |  |||||||| ||||  || || |||||||||||||| ||||| ||||||||||||||||| |||||  |||||||||| || |||||||  |||||| ||| ||  | ||  ||| | ||  ||||    ||   | |  ||  |   ||||||||       || | | |     |||  |  | |             
AACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATTATCTCGCATGAAGgta-tgtcattgt-ttttttgatgtt-gtgtt---tacctgc-tggttgaattgtttccttgtggttttagatgtgtctggtttatcgtgcag-------------

upper sequence: GLYMA05G30230.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 8
AACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTTGTCTCGCACAAAGgtaatgtaatcttgttaattgttatttatgttaggcactcaca---------tttttagacatt-----ttccttggaaaaaaaggtctattattcttacggaactgcttctcatgacag-------------------
||||| |||||| || || |  || || |||||||||||||||||||| || || || ||||| ||||||||  ||||||||||||| |||||||  |||||||   |  ||  | |  ||||     |  ||     ||  |         | || | ||||      ||  ||  ||  | |  |||| |  | |||   | |    |   |||  |                    
AACTGCACAGAGGATAGTTCATGCCTCTGATCCTCTGCAGTCAATGCAAGAGATCAACCAAAATTTCCCTAGTGTAGTTTCTTCCTTATCTCGCATGAAGgtaaatcatcctactaagatgttgcaggtcctaaatgatctaaaaaggtgtctgttgaaacatggaaagtttgttccaaggata--tctaatgcttttagacatcctgattaaatggtatggtgctgaacattttgcag