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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAGTTATTCTTTCAGCTGTTGTTGGCACTGGTGCTCAACTTGCGTTGCTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcataaccttcaactgactgaaacataagtttgaataatgaattcattggaacctagttgcgtactaatgttactaaatgtaataagcatgtgg...

Basic information

species Glycine max
transcript GLYMA05G30210.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 5'ss of exon 8
ACTTAGTTATTCTTTCAGCTGTTGTTGGCACTGGTGCTCAACTTGCGTTGCTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcataaccttcaactgactgaaacataagtttgaataatgaattcattggaacctagttgcgtactaatgttactaaatgtaataagcatgtgg-
|  | ||| |  |||||||||||||||||||||||||||| || ||  |||| ||||| |||||| || | ||||| ||| |||||||||||||| | ||||| | | | | ||  | | |||   ||    |  | |  |||   |    ||     |    |||  |  || |  | |      |  ||    | ||  
ATATGGTTTTATTTTCAGCTGTTGTTGGCACTGGTGCTCAGCTGGCCATGCTTGTTCTCCTTGTCATCATTTTGGCAATTATTGGGATGTTGTATATAGGgtacgagtagagccaacca-tgataaaattgaacttgttgatatgaagcatatgatctctctattgactgttatttcttcatgcctttttatttgtttgaa

upper sequence: GLYMA05G30210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 8
ACTTAGTTATTCTTTCAGCTGTTGTTGGCACTGGTGCTCAACTTGCGTTGCTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcataaccttcaactgactgaaacataagtttgaataatgaattcattggaacctagttgcgtactaatgttactaaatgta--ataagcatgtgg--------
| |||||| | |||||||||||||||||||| |||||||| || |||||||| ||||| |||||| |||| ||||| |||||||  ||||||||| | |||||||| || |||    ||||   |||||  ||   | |||| ||   |   ||||| |   ||||  |   |||| |  |   |  |  ||||  ||  ||        
ATTTAGTTCTACTTTCAGCTGTTGTTGGCACAGGTGCTCAGCTAGCGTTGCTTGTTCTCCTTGTCATCTTATTGGCAATTGTTGCAATGTTGTATATCGGgtatgttcagaact---aacta--tgaaatgta---tcgaatgatctctattttggagct--gttgtctttgaatgatggttgcttcattataattattgggatggaagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193629435|gb|FK575471.1|FK575471
EST:     CTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGG                         GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATG
genomic: CTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcat ... cttgtctcagGCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATG
EST: gi|207773535|gb|GD744127.1|GD744127
EST:     CTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGG                         GCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCA
genomic: CTGGTTCTTCTTGTCGTCTTGTTGGCTATTGTTGGGATGTTGTATGTTGGgtatgtgcat ... cttgtctcagGCGAGGAGCCATTGTCACTACTTTCATTGTGTGTTATGCTCTCA