Sequence
atgc intronic sequence ATGC exonic sequenceGTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTACATTGGATTAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAGgttagttagttgagtgtcttttctgtgtttataaatctgcatgttttctttttctttttggggtttcaattattgtccggtagtatttctgaaatattatgtatgttgaaactgaaag
Basic information
species | Glycine max |
transcript | GLYMA05G28630.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G28630.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0134g00150.t01 (Vitis vinifera), 5'ss of exon 8
GTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTACATTGGATTAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAGgttagtt---agttgagtg--tcttttctgtgttt--ataaatctgcatgttttctttttctttttggggtttcaattattgtccggtagtatttctg------aaatattatgtatgttga--aactgaaag-------
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GTCTGTTACTCATGGTGGGTGCTTTCAAGCTTGATCATGATTGACAGAGCTCATTGGATTGACAAGGATAAGCTCATTAAATTTATAATAGACTGTCAGgtcagttctaaactaaatgaactgttacttagtttcagtttaatttcatagaaaaacctagaattttgcaccttacctctctgctgctttttcatttacaaggtaaatatgatcctcagttattggctgaaaaattgcag
upper sequence: GLYMA05G28630.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0024g00080.t01 (Vitis vinifera), 5'ss of exon 8
GTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTACATTGGATTAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAGgttagtt---agttgagtg---tcttttctgtgtttata-aatctgcat-gttttctttttctttttggggtttcaattattgtccggtagtatttctgaaatattatgtatgttgaaactgaaag
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GTCTGTTACTCATGGTGGGTGCTATCAAGCCTGATCATGATTGACAGAGCTCATTGGATTGACAAGGAAAAGCTCATTAAATTCATCTTAGATTGTCAGgtcagttctaaactaagtgagctgttatttagattcagataacttacacagaaatcctagcccttatttagatttagtt-taacttaaaaaggtggttaaaattctcagtttgtggaaaatgcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19452569|gb|BM953979.1|BM953979EST: TACATTGGATTAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAG GACACAGAAAATGGTGGAATTTCGGACAGCCCAGATGATGCCGTGGATGTC
genomic: TACATTGGATTAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAGgttagttagt ... aaactgaaagGACACAGAAAATGGTGGAATTTCGGACAGGCCAGATGATGCCGTGGATGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTACATTGGATTAGTAAGGAGAAGCTTATAAAGTTCATCTTAGACTGCCAGgttagttagttgagtgtcttttctgtgtttataaatctgcatgttttctttttctttttggggtttcaattattgtccggtagtatttctgaaatattatgtatgttgaaactgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC