Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGACACCTTTAACACTGCAGTTGTATCACCAATTTACTATGTCATGTTTACATCATTCACCATCTTTGCCAGCATAATCATGTTTAAGgtaactaattgccttctatgattccatatatatatatatatatatacttttgtttaaaatgtacctgatgatactactaaattatgcaatcatatagtag...

Basic information

species Glycine max
transcript GLYMA05G28580.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28580.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G13800.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTTTGGACACCTTTAACACTGCAGTTGTATCACCAATTTACTATGTCATGTTTACATCATTCACCATCTTTGCCAGCATAATCATGTTTAAGgtaactaattgccttctatgattccatatatatatatatatatatacttttgtttaaaatgtacctgatgatactactaaattatgcaatcatatagtag
||| |||| |  || ||||| |||||  |||| ||| | |||||||| ||||||||| ||||||||||||| || || || |||||||| ||||||   || |||  | | |||    |  |    ||| |  || |   ||    ||||  | ||    ||   |  | ||  ||     ||| | |||   
GCTCTGGATAATTTCAACACAGCAGTCATATCTCCAGTGTACTATGTTATGTTTACAACATTCACCATCTTAGCTAGTATGATCATGTTCAAGgta---aaatgcagtttttga---gaagtgatcataaac-taaaaggttccaattaatttataagc-atagcatcatta--tttgtttatcgtctag---

upper sequence: GLYMA05G28580.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0029g00620.t01 (Vitis vinifera), 5'ss of exon 6
GCTTTGGACACCTTTAACACTGCAGTTGTATCACCAATTTACTATGTCATGTTTACATCATTCACCATCTTTGCCAGCATAATCATGTTTAAGgtaactaattgccttctatgattccatatatatatatatatatatacttttgtttaaaatgtacctgatgatactactaaattat--gcaatcatatagtag-
||  |||||||||||||||| || ||| |||| ||  | |||||||||||||||||  |  |||||||  |||||||||| |||||||||||||| | | |    ||  ||   ||| |    | | |  | |  | || |||| | |    | | | | |  ||   |   || |||  |  | ||| | |    
GCACTGGACACCTTTAACACGGCTGTTATATCTCCGGTGTACTATGTCATGTTTACTACCCTCACCATTCTTGCCAGCATGATCATGTTTAAGgtgattcaa---ctaatacatttctactgttctttggaaaggtttaattttctcttctttattctttacaatgtcagagaagtatcagggaacatttggatat

upper sequence: GLYMA05G28580.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ15113 (Selaginella moellendorffii), 5'ss of exon 7
GCTTTGGACACCTTTAACACTGCAGTTGTATCACCAATTTACTATGTCATGTTTACATCATTCACCATCTTTGCCAGCATAATCATGTTTAAGgtaactaattgccttctatgattccatatatatatatatatatatact-tttgtttaaaatgtacctgatgatactactaaattatgcaatcatatagtag
|| || || || ||||| |||||||||||||| ||||||||||||||||||||||| || || || ||| | || ||| | |||||||| |||||   |  || |  | ||  | | |    |   |      | | || |  || |||    ||| || |                                 
GCGTTAGATACTTTTAATACTGCAGTTGTATCTCCAATTTACTATGTCATGTTTACCTCCTTGACAATCGTAGCTAGCGTCATCATGTTCAAGgttcgttctttctgtttactacttcgccaaggaaccagcgtttttaatacttatttggtttgt-ccag---------------------------------

upper sequence: GLYMA05G28580.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ16080 (Selaginella moellendorffii), 5'ss of exon 7
GCTTTGGACACCTTTAACACTGCAGTTGTATCACCAATTTACTATGTCATGTTTACATCATTCACCATCTTTGCCAGCATAATCATGTTTAAGgtaactaattgccttctatgattccatatatatatatatatatat-acttttgtttaaaatgtacctgatgatactactaaattatgcaatcatatagtag
|| || || || ||||| |||||||||||||| || |||||||||||||||||||| || || || ||| | || ||| | |||||||| |||||   |  || |  | ||  | | |    |   |     || | | |   || |||    ||| || |                                 
GCGTTAGATACTTTTAATACTGCAGTTGTATCTCCCATTTACTATGTCATGTTTACCTCCTTGACAATCGTAGCTAGCGTCATCATGTTCAAGgttcgttctttctgtttactacttcgccaaggaaccaccattttttatacttatttggtttgt-ccag---------------------------------