1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGCCGAAGCTGCTCTAAATCATGAGTGGTTTCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgacctaataggaaatgctggagcaattttattaaagaaaaactttttgtaattctcttgtctagataaaagagggaagttgtgtaaatatttgttgaccctatataacatttatttttgacaagttgtcataatttcatcaatcatcatataaatag
species | Glycine max |
transcript | GLYMA05G27820.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGTAAAGAAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAG GCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCGEST: gi|207835711|gb|GD806478.1|GD806478
genomic: AAAGTAAAG-AATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgac ... atataaatagGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCG
EST: AAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAG GCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGTCGEST: gi|193500667|gb|FK464464.1|FK464464
genomic: AAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgac ... atataaatagGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCG
EST: AAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAG GCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCGEST: gi|208140586|gb|GD938680.1|GD938680
genomic: AAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgac ... atataaatagGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCG
EST: AAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAG GCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGEST: gi|58018277|gb|CX705019.1|CX705019
genomic: AAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgac ... atataaatagGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAG
EST: AAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAG GCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCG
genomic: AAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgac ... atataaatagGCGTGTGCGGAGAATATACAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCGAAGCTGCTCTAAATCATGAGTGGTTTCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgacctaataggaaatgctggagcaattttattaaagaaaaactttttgtaattctcttgtctagataaaagagggaagttgtgtaaatatttgttgaccctatataacatttatttttgacaagttgtcataatttcatcaatcatcatataaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA