Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttttgctttactttgtgtccactgtctatccttttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag

Basic information

species Glycine max
transcript GLYMA05G25780.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g44040.2 (Oryza sativa), 5'ss of exon 7
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttttgctttactttgtgtccactgtctatccttttcctgttactctttttgcataaacaatatacctaactcgttaaaattcct-tgcag
||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||| |||  ||||| ||||| ||| |  | |||||||||||   |       ||| ||| ||  ||| | | | | ||  |  |        | ||   | ||    || |  |  ||  ||  |   | |||          | | |||   |||||
AATTCGTGTTTTCATTGCTGCCTATGTCTGGATGACTGGATTTGGGAACTTCTCATACTATTATATTAAGAAAGACTTTAGTCTTGCCAGATTTGCTCAGgtgcca----ttctgatctttaaccccaatct-gttctatatgatac------tttagtatgttttcatttccttgatttaatgcatggtttacactgacaaccatatttctaatgcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 7
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttttgctttactttgtgtccactgtctatccttttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
||| || || ||||||||||| ||||| |||||||||||||| || || ||||| ||||||||| | |  |||||||||||| || || | ||||| |||||  |    |||| | ||    || ||| | ||| ||              |  |  |   |||  ||| ||  | || |   ||| | || |    |    |||||      |||||
AATTCGGGTGTTCATTGCTGCCTATGTCTGGATGACTGGATTCGGGAATTTCTCATATTATTATATCAAGAAAGATTTTAGCATTGCAAGATTTGCACAGgt--ttccatcctagcccaattat-ccaatgttgtttc------------ttaccccttgatttgttgtaaccatcttag---aaatactaaagaccatcttttaaa------tgcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttt-tgcttta-ctttgtgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
||| ||||| |||||||||   ||||| ||||||||||||||||| || ||||||||||| ||| | |  |||||||||||  || || | ||||| |||||      |        | | | |   ||||| |||| |  | |  ||      ||||    | |||| ||||||    |||   ||| || || ||| ||    |  |  |||| |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCGCAGgtgcctatgctacc--tcatcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagacc-aataactatactttccatgcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: AC218988.3_FGT003 (Zea mays), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttt-tgctttactttg-tgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
|||  |||| |||||||||   ||||| ||||||||||||||||| || ||||||||||| ||| | |  |||||||||||  || || | |||||||||||      |        | | | |   ||||| |||| | |  |  ||      ||||    | |||  ||||||    |||   ||| || || ||| ||    |  |  |||| |||||
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgtctatgctacc--tcatcagtcttattttgtgctatgccctaatgagtttagtctcctgtattttttgttaccgccttt---taagcactagacc-aataactatactttccatgcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: AC208418.3_FGT009 (Zea mays), 5'ss of exon 3
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttt-tgcttta-ctttgtgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
|||  |||| |||||||||   ||||| ||||||||||||||||| || ||||||||||| ||| | |  |||||||||||  || || | |||||||||||      |        | | | |   ||||| |||| |  | |  ||      ||||    | |||  ||||||    |||   ||| || || ||| ||    |  |  |||| |||||
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgtctatgctacc--tcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtattttttgttaccgccttt---taagcactagacc-aataactatactttccatgcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G147351_T01 (Zea mays), 5'ss of exon 1
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttt-tgcttta-ctttgtgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
||| ||||| |||||||||   ||||| ||||||||||||||||| || ||||| ||||| ||| | |  |||||||||||  || || | |||||||||||      |        | | | |   ||||| |||| |  | |  ||      ||||    | |||| ||||||    |||   ||| || || ||| ||    |  |  |||| |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacc--tcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagacc-aataactatactttccatgcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttt-tgcttta-ctttgtgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
||| ||||| |||||||||   ||||| ||||||||||||||||| || ||||| ||||| ||| | |  |||||||||||  || || | |||||||||||      |        | | | |   ||||| |||| |  | |  ||      ||||    | |||| ||||||    |||   ||| || || | | ||    |  |  |||| |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacc--tcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagaac-aataactatactttccatgcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttt-tgcttta-ctttgtgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
||| ||||| |||||||||   ||||| ||||||||| ||||||| || ||||||||||| ||| | |  |||||||||||  || || | |||||||||||      |        | | | |   ||||| |||| |  | |  ||      ||||    | |||| ||||||    |||   ||| || || ||| ||    |  |  |||| || ||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTAGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacc--tcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttt---taagcactagacc-aataactatactttccatgtag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 8
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttttgctttactttgtgtccactgtctatccttttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
||| ||| | || |||||||| ||||||||||||||||| |||||||||||||| || || ||||| ||||| |||||     || |||||||||| ||||| ||| | | | |  |   |||  |  |  |   | |||||  |   |    ||||   | |   || | |||||   |                                      
AATCCGTATCTTTATTGCTGCTTATGTTTGGATGACTGGTTTTGGAAACTTCTCTTACTACTATGTCAGAAAGGATTTCTCTGTTGCACGTTTTGCGCAGgtgatacaattcattccacaaaaagctctcgtcattgtacttgataatccgcatctaaaatct---tggttctcttgcag--------------------------------------

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaata-ccatttttgctttactttgtgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
|||  | |||||||||||||| || || ||||||||||| ||||| |||||||| ||||| ||| | ||||| |||||   |||  |||| ||| ||||||| ||             |||| ||        || | ||   ||  || |  |   ||  | ||| |  | ||||    ||| | |  || |    ||  || |  |            
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagttaattagttgaccatgatata---tgcttctaagggacatgttgttttcaatgactcaagatgc-tcatgaaaacttttacttcttccag-----------

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtc---cttgaccttaaataccatttttgctttactttgtgtccactgtctatccttttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||  | || || |||||||||||| |||| ||| | ||||| |    ||      ||| ||     | ||||| |   |||       |    |  || | | ||| || |   ||  |||  ||||   |   |  | | || |||   |    |||||
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataattta-ggatgtgaatctttactttctaatgcag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S74_21V6.1 (Physcomitrella patens), 5'ss of exon 7
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttttgctttactttgtgtccactgtctatccttttcctgttactc---tttttgcataaacaatatacctaactcgttaaaattccttgcag-----------------------------------------
 || || || ||||||||||| || ||||||||||| || ||||| ||||| || || ||||| ||| |||||||||||||| |    |||||||| |||||  | |     ||  | |||  |       ||| ||  ||| || |     || ||       || ||||      | | ||   |  ||  |||| |   |  ||    |   ||  ||                                         
TATTCGGGTGTTCATTGCTGCCTACGTTTGGATGACGGGTTTTGGCAACTTTTCGTACTATTACGTTCGAAAAGATTTTAGCTTGGGTCGTTTTGCACAGgt--ttgttcagttcgctttatctgtaccagttgattatcttggtctatgaggtgtactgcaaaccagttatgaggatgtgtgttaattcatcatacattgtttcttgttttgtttttaaggaattgttagcacacgttaacggtttttagtgccatgacag

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ29067 (Selaginella moellendorffii), 5'ss of exon 7
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaataccatttttgctttactttgtgtccactgtctatccttttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag
 |||||  | |||||||| |  ||||| |||||||||||||| || ||||| ||||| ||||||||  |||| ||||| |||||    || |||||||||||||  |  || |||  ||   |     ||  ||||||    ||    ||||  |                                                               
TATACGACTCTTCATTGCGGGTTATGTCTGGATGACTGGATTCGGGAACTTTTCCTACTATTATGTGCGAAAGGATTTCAGCCTGGGTCGGTTTGCTCAGgtaactgcttctttgcactcgtaag---ttcatgctttg---tgaacgcacttgcag-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193645584|gb|FK590916.1|FK590916
EST:     ACGTTTTGCTCAG                         ATGATGTGGCGGCTTAA-TTTTTTGTGGCCTTCTGTTGTATTGTGCTTAAC
genomic: ACGTTTTGCTCAGgtaatagagt ... ttccttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGTATTGTGCTTAAC
EST: gi|193308879|gb|FK277843.1|FK277843
EST:     TCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAG                         ATGATGTGGCGGCTTAATTTTTT-GTGGCCTTCTGTTGTTATTGTGCTTAA
genomic: TCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagt ... ttccttgcagATGATGTGGCGGCTTAATTTTTTTGTGGCCTTCTGTTGT-ATTGTGCTTAA