Sequence
atgc intronic sequence ATGC exonic sequenceTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGgtaaaatccttgttgttatttatcatttggaaatcaaatagtaaacaactattttacttaatcataacatctatcacttttgttcattcag
Basic information
species | Glycine max |
transcript | GLYMA05G22970.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G028151_T01 (Zea mays), 5'ss of exon 6
TTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGgtaaaatccttgttgttatttatcatttg--gaaatcaaatagtaaacaactattttacttaatcataacatctatcact-tttgttcattcag
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GTGGAGGACTACAGGGAAGAGCTGGAGGAGATGAAGAACATGACCAGACAGGAGTACGTCGCTCACCTGAGAAGgta------ctgatactatctatcatctgatgctgtctgttttggtcgaaccgtagcttgcatgctcaccatggatcgccatctgttc---cag
upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 5'ss of exon 6
TTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGgtaaaatccttgttgttatttatcatttggaaatcaaatagtaaacaactattttacttaatcataacatctatcacttttgttcattcag----------------------------------------------
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-------------------------AAGACATGAAGAACATGACTAGACAAGAATATGTTGCACATTTGAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGAGGAGTCACAAGgtccttttaaattacatttatataactttatataatacatagtttaataatgtgaatattgactttgtgtgagttttttgtactag
upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 5
TTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGgtaaaatccttgtt--gttatttatcatttggaaa-tcaaatagtaaacaactattttacttaatcataacatctatcacttttgttcattcag
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TTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAGgtaaatgcttcgctctgttcattgtagtatggtgtcttgatttgtacgct-ccatttcatttcttttcttaatctatcttctttgcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14126414|gb|BG790852.1|BG790852EST: GAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAG AAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAG
genomic: GAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGgtaaaatcct ... gttcattcagAAAAAGCAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAAGAGTATGTTGCTCATTTGAGAAGgtaaaatccttgttgttatttatcatttggaaatcaaatagtaaacaactattttacttaatcataacatctatcacttttgttcattcag
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - AAGAAC