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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGgtatgctcgagtctgtttctgtcatatatgtatgtgtttactttgctaggaaattagtgtttgctttatacaatttgtatcgtatcagtaatcggtaatt...

Basic information

species Glycine max
transcript GLYMA05G21570.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21570.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0024g00850.t01 (Vitis vinifera), 5'ss of exon 8
GTTGTATCTTTATTGGCAAAAGTTGTAGAGCATCTTGTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGgtatgctcgagtctgtttctgtcatatatgtatgtgtttactttgctaggaaatta-gtgtttgctttatacaatttgtatcgtatcagtaatcggtaatt
|||||||| ||||| |||| |||||||||||||||||| || || ||||||||||||||||| |  |||||||| |||||    |||||||||   ||   |||    |   ||| |||||  |   | | || | |   ||  | |||  |||      ||| | || | |   | ||   ||   
GTTGTATCATTATTAGCAACAGTTGTAGAGCATCTTGTTACAGGTGAGACCATGCAAATGACAAGTACATCTGAGCAACGTGTCAGgtatgctgctgtacatttggccctagtat-tatgttatatttcttcttgcactatatatctttttttttctttctttctttcttttttctcataaatacac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424725|gb|CA936245.1|CA936245
EST:     GTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAG                         CATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATC
genomic: GTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGgtatgctcga ... atattttcagCATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATC
EST: gi|151411625|gb|EV281436.1|EV281436
EST:     GTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAG                         CATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATC
genomic: GTAACTGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGgtatgctcga ... atattttcagCATGGAATATTATATGCAAAAGACCTACTACAAGACTGCATCTTTAATATC