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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGATCAAGCGTTGGGGAATCAAGCCCCAAATGCTGTAACCCATGATCAGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttacttcatacactttataatataatttattattagtagtagtagtagtattttgtttgatggtttgttcattcctttttaagtttcctaatattcttcctttttatttcctgcttattaatttttccattcag

Basic information

species Glycine max
transcript GLYMA05G18170.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729281|gb|BU762726.1|BU762726
EST:     AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG                         CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
EST: gi|22525794|gb|BU084605.1|BU084605
EST:     AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG                         CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGAC
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGAC
EST: gi|208334667|gb|GE128804.1|GE128804
EST:     AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG                         CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
EST: gi|207820322|gb|GD792118.1|GD792118
EST:     AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG                         CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
EST: gi|16280595|gb|BI944044.1|BI944044
EST:     AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAG                         CTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA
genomic: AGCACATGCCATCTGAGTCTAATTGGCGTAATGGGGGAATCAAGCCTAAGgttcttactt ... ttccattcagCTGGTGAATATACTCCCAAAACCATGTTACAGAAGCAACAACAAGGACACA