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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTGgtaagtttccacaattctttgttacttaagttattgtcctgttctttgccttaggaagatgaggaaattcattctggtctagtttcatatgttataatctatattgttaattttacag

Basic information

species Glycine max
transcript GLYMA05G15750.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G15750.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G50240.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTGgtaagtttccacaattctttgttacttaagtt----attgtcctgtt-------ctttgccttaggaagatgaggaaattcat--------tctggtctagtttcatat---gttataatctatattgttaattttacag------------------------------------
||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||| ||||| || || || ||||| ||||||  |||     || | |||  | || |    ||| | |||         ||   |  |  |   || ||  ||  ||         |  || | |     | ||      |  |   | |||||| | ||   ||                                    
CTTGCATCAGTCCTGCTGACATCAATGCTGAGGAAACTCTTAACACGCTCAAGTATGCAAATCGTGCTCGGAATATCCAGAACAAACCTGTTgtaagta-ccaaggaactatcttagatgagctttcaatttttctgcatacagaactccactatcaggctatcagctaacacaaaaagtacatgaggccaaaaaatagattaaaacaggactaagattgttcacttcggagcactaacaggaaaggcttctttatttgggtgcacag

upper sequence: GLYMA05G15750.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g00130.t01 (Vitis vinifera), 5'ss of exon 8
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTGgtaagtttccacaatt--------------ctttgttacttaagttattgtcctgttctttgccttag-gaagatgaggaaattcattctggtctagtttcatatgttataatctatattgttaa----ttttacag-------
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||||| ||||| || ||||||||||| |||||| ||    |||              | || || |||    |||| |||  | |||  ||| |  | |  ||  |||| |   | | |   |  | |||| ||| |  |   || ||   |     ||||          
CTTGCATCAGTCCTGCTGATATCAATGCTGAGGAAACTCTTAATACTCTCAAATATGCTAATCGCGCTCGTAATATCCAGAATAAGCCTGTTgtaagtatctcagattaccttatctttttcccttatttcttgtcctattttcccctccttctcctcaatgtaattggagaaacttggtattga--aactccatacgttctggtgcctaatgaagaagccctttatcttattcag

upper sequence: GLYMA05G15750.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ26093 (Selaginella moellendorffii), 5'ss of exon 8
CTTGCATTAGTCCTGCTGATATCAATGCTGAGGAAACTCTCAATACTCTCAAGTATGCAAACCGTGCTCGCAATATTCAAAATAAGCCTGTGgtaagtttccacaattctttgttacttaagttattgtcctgttctttgccttaggaagatgaggaaattcattctggtctagtttcatatgttataatctatattgttaattttacag
| ||| | || ||||| |||   || || || ||||||||||| ||||| |||||||| || || ||||| ||||||||||| |||||    |||||| |    |   | ||   |   | || |  |   | ||  ||||                                                                     
CATGCGTCAGCCCTGCAGATTCTAACGCAGAAGAAACTCTCAACACTCTGAAGTATGCTAATCGGGCTCGAAATATTCAAAACAAGCCGACTgtaagtgtttttagcacattaaaaac-atgtaaaaggaatctttattgcag-------------------------------------------------------------------