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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTGGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCAGCAGAGgtaatttctatttcaaatagctggcctcctactgcaatatataaatttgacaatacacaaccctgaatcctcgagtaattttgttctttagattcagttt...

Basic information

species Glycine max
transcript GLYMA05G09460.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09460.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 5'ss of exon 8
AGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTGGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCAGCAGAGgtaatttctatt------tcaaatagctggcctcctactgcaatatataaatttgacaatacacaaccctgaatcctcgagtaattttgttctttagattcagttt
||| |||| ||||| ||||||||||||||   |  ||||||||||||| | ||||||  |||||| ||||||||||| ||||||  |||||| | || ||| | |  |  |      || || | |     |  |  ||||  |||    | |||     |     ||  |   || ||| ||||| | |       |  ||   
AGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCGgttagtaatgctggtttctccaaaaacatagtttattttgcag-ataatcttatgattcctcttcctcccaacagcttgagaaatttggatgccct--tctag---