Sequence
atgc intronic sequence ATGC exonic sequenceTTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTCACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGgtatgtcaaatttccacatttttgctcgatcattcaccactaagttgttcttcggtttggggttagcccattgccaatacacaatatgagattatatttt...
Basic information
species | Glycine max |
transcript | GLYMA05G06140.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 8
TTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTCACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGgtatgtcaaatttccacatttttgctcgatcattcaccactaagttgttcttcggtttggggttagcccattgccaat--acacaatatgagattatatttt
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TTCTCCCCTTGGGAAGGCCTGTTCCGGTATGGACCTTACAGCAGTACATGATATATTGCTCAAAACAGGTTACAAAGATGAAGAAGGTGCAGAAAATGAGgta-actatcttgctgtaaagttgttgcatttgttttc-ctagtctatgatgcatctgagctatatcacacactgaatttactcattcttgaaatgccctag
upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G054634_T01 (Zea mays), 5'ss of exon 8
TTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTCACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGgtatgtcaaatttccacatttttgctcgatcattcaccactaagttgttcttcggtttggggttagcccattgccaatacacaatatgagattatatttt-----
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TTCTCCACTCAGAAAGGCCTGCACTGGTATGGATCTTTCAGCGGTGCATGATATTTTGCTCAAAACAGGTTATAAAGATGATGAGGGTGCAGAAAACGAGgtaact--aatagtcaaatttacatctgact-tgtgccatcgatttgtgatcaattttcc--tcagtcccctcttccgttttgattcatttttccacttgactca
upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G169080_T01 (Zea mays), 5'ss of exon 8
TTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTCACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGgtatgtcaaatttccacat-ttttgc-tcgatcattcaccactaagttgttcttcggtttggggttagcccattgccaatacacaatatgagattatatttt
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TTCTCCACTTGGGAAGGCCTGCGCTGGTATGGATCTTTCAGCGGTGCATGATATTTTACTCAAAACAGGTTATAAAGATGACGAGGGTGCAGAAAACGAGgtaactaacaatcaaatttattctgcatctgacttgtgccatcaatttgtgatgaactttcctcttccactttgctttattttcccgcttaactca-attg-
upper sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 8
TTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTCACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGgtatgtcaaat------ttccacatttttgctcgatcattcaccactaagttgttcttcggtttggggttagcccattgccaatacacaata--tgagattatatttt
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GTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTTACTGCTGTACATGATATATTGCTTAAAACAGGTTATAAAGATGAAGAGGGTGCGGAGAATGAGgtaaatagaataatttattctggtcctttacattatcctggacaactac-ttgtaattccatctga--ccagttgataagtcttataaaactaccaaaatcat-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14011822|gb|BG726744.1|BG726744EST: GCAGAAAATGAG CTTTCATTCCAAGAATGGACACAACAAGTGCAAGATATCTTGAACACAAAA
genomic: GCAGAAAATGAGgtatgtcaaa ... gtaattgcagCTTTCATTCCAAGAATGGACACAACAAGTGCAAGATATCTTGAACACAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTCACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGgtatgtcaaatttccacatttttgctcgatcattcaccactaagttgttcttcggtttggggttagcccattgccaatacacaatatgagattatatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggggt