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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGTGGGAAACTTTTGTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGgtatgtatagaattatttttatggtaactaaatatgaatctactttcatccatattttgatattttaattatgtaataatttgttattcttgaaaatgcag

Basic information

species Glycine max
transcript GLYMA05G05580.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599461|gb|DB980028.1|DB980028
EST:     GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAG                         GGACATAACAACATCTTTCCCAAGTTTTATATTTGACTCTAATGTGGATGA
genomic: GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGgtatgtatag ... gaaaatgcagGGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGA
EST: gi|151398929|gb|EV268800.1|EV268800
EST:     GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAG                         GGACATAACAACATCTTTTCCCAAGTTTTTATATTTAACTCTAATGTGGAT
genomic: GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGgtatgtatag ... gaaaatgcagGGACATAACAACATC-TTTCCCAAG-TTTTATATTTAACTCTAATGTGGAT
EST: gi|151409699|gb|EV279507.1|EV279507
EST:     GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAG                         GGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGA
genomic: GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGgtatgtatag ... gaaaatgcagGGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGA
EST: gi|7284862|gb|AW597349.1|AW597349
EST:     GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAG                         GGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGA
genomic: GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGgtatgtatag ... gaaaatgcagGGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGA
EST: gi|6726203|gb|AW310557.1|AW310557
EST:     GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAG                         GGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGA
genomic: GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGgtatgtatag ... gaaaatgcagGGACATAACAACATCTTTCCCAAGTTTTATATTTAACTCTAATGTGGATGA
EST: gi|192316103|gb|FK007164.1|FK007164
EST:     GTTAAAA-GA-TCCGTCACTATTAAAA-TCATGACCCTTCCTTATCTGAG                         G-ACATAACA-CATCTTTCCCA
genomic: GTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGgtatgtatag ... gaaaatgcagGGACATAACAACATCTTTCCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGACCTAAACCAAGATGGGAAAATCGACACCGAAGAGTGGGAAACTTTTGTTAAAAAGAATCCGTCACTATTAAAAATCATGACCCTTCCTTATCTGAGgtatgtatagaattatttttatggtaactaaatatgaatctactttcatccatattttgatattttaattatgtaataatttgttattcttgaaaatgcag

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