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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTGgtgagaaatttcatttgatttaataattgaattattccacgtgcgtgacatgaattaaatgaattatgagtgcgtcctaaattttttgctacatatattc...

Basic information

species Glycine max
transcript GLYMA04G43650.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43650.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G087692_T01 (Zea mays), 5'ss of exon 6
GTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTGg--tgagaaatttcatttgatttaataattgaattattccacgtgcgtgacatgaattaaatgaattatgagtgcgtcctaaattttttgctacatatattc
|| || || || || || |||||||| |||||||| || ||||||||||| |||||||||||| |||||   |||| |||  | | |||  ||   ||        | || | |   |||    |     ||      |||        |   |||  |         |   |       || | |||  
GTCCGTGACGCAGGAAACCTTTTGACAAGGGCAGGCTTTACCCTTCCAGGAGTTGATGTTGATCAGTATACCGTTAGATACAATAATGgtttgtagaaaaaagaaagcttcagtttctgatgagtgttgtgtattgttcatcttcccttttccttacaatattacatgatggtagaataaacgtgtat--

upper sequence: GLYMA04G43650.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTCGAGATGCTGGGAATCTTTTGACTAGGGCAGGTTTCACCCTTCCAGGGGTTGATGTTGATGAGTATGTAGTTAAATATGAAAGTGgtgagaaatttcatttgatttaataattgaattattccacgtgcgtgacatgaattaaatgaattatgagtgcgtcctaaattttttgctacatatattc------
||| | || || |||||||| ||||| ||||| ||||| |  ||||| || |||||||||||||| ||||||||||||||  | || ||| |    || || ||  |||  || || |    || ||    ||||   |   ||  | |||||||   |  |   |   || |    || || | |        
GTTAGGGACGCAGGGAATCTGTTGACCAGGGCGGGTTTTAGTCTTCCTGGTGTTGATGTTGATGAATATGTAGTTAAATACAAGAGAGgtaaactgttccacttt-tttcctacttcatcgtttgcaacaacgtg---tatcttccaagaattatt--tctgatttgccttctcgtttatatctttctactcag