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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTTGGCAACAACCCTTGCTCGTCATCGATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccactagacttctatgtgtgtgcataaaatattagtaaagaggccactcctcttctatgctcctcattgtgactttgtattttag

Basic information

species Glycine max
transcript GLYMA04G43340.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43340.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ10043 (Selaginella moellendorffii), 5'ss of exon 8
GTGTCTTGGCAACAACCCTTGCTCGTCATCGATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccactagacttctatgtgtgtgcataaaatattagtaaagaggccactcctcttctatgctcctcattgtgactttgtattttag
|  |  |  |    || || ||||| ||| |||| || ||  | | ||||||||| |||||||| ||||||||||||||  ||  ||||||||  | ||     |    |||  ||| |||  |   |||   | |   | ||                                    
GCATGCTCACTGTCACTCTGGCTCGGCATAGATCCAAGCCTCGCGCCTACATTGGATGTATGAAGTCTGGACCTGTCCTGGCTCAAAAgtaagagctctg----ttaccgtgaatgc-taagctccaagttt-gtgattattcag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180725|gb|HO022164.1|HO022164
EST:     CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA                         GGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
genomic: CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccac ... tgtattttagGGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
EST: gi|41146199|gb|CK606410.1|CK606410
EST:     GGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA                         GGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
genomic: GGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccac ... tgtattttagGGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
EST: gi|8827480|gb|BE211210.1|BE211210
EST:     CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA                         GGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
genomic: CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccac ... tgtattttagGGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
EST: gi|151395197|gb|EV265068.1|EV265068
EST:     CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA                         GGATGTCAAATACCATGAACCTGAGTTTTGG
genomic: CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccac ... tgtattttagGGATGTCAAATACCATGAACCTGAGTTTTGG
EST: gi|51337140|gb|CO981006.1|CO981006
EST:     CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA                         GGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
genomic: CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccac ... tgtattttagGGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
EST: gi|151412778|gb|EV282590.1|EV282590
EST:     CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAA                         GGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA
genomic: CCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAgtaagtccac ... tgtattttagGGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAA