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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATCATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagatcatgcacctagctacaactgattattttttaaattcatatacacatatgctgcaccatccaatgcttcacttggtgcttattatttaatt...

Basic information

species Glycine max
transcript GLYMA04G43150.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43150.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 6
CATTAACTCAACTGTTGGATCTCTCCTTGTCAGCTTCACTGTTTACATCATTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagatcatgcacctagctacaactgattattttttaaattcatataca-catatgctgcaccatccaatgcttcacttggtgcttattatttaatt-----
 || || ||  | || ||||||||| | || ||||||||||| |||||||| || || |||||||| ||| ||||||||||| | || ||  | ||||||||   |||||     || |  | | || |   ||||||  || |  |  |    ||||    ||    | ||||  |    |  ||    |     |||||     
AATCAATTCCGCGGTCGGATCTCTCTTAGTTAGCTTCACTGTCTACATCATCCCCGCATTGGCTCATATGCTTACCTTTGCTCCTGCTCCTTCAAGAGAGgt---tagatttccaactt--cca-aaatatctattttaaaattataattgtttcataaaaagcttgttacaattttagtataagtttacaaagaataattggaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9987757|gb|BE661865.1|BE661865
EST:     TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAG                         AATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTAC
genomic: TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagat ... ttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTAC
EST: gi|151409205|gb|EV279013.1|EV279013
EST:     TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAG                         AATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTAC
genomic: TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagat ... ttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTAC
EST: gi|17401655|gb|BM178437.1|BM178437
EST:     TTCCTGCTTTGGATCACATGGTTACCTTTGCTTCAGCACCGGCTACAGAG                         AATGCTGTGGAGAGACCACCATCAAAGGTAGGAGGCTGGGCAGGATTGTAC
genomic: TTCCTGCTTTGGCTCACATGGTTACCTTTGCTTCAGCACCGGCTAGAGAGgtaattagat ... ttcttaacagAATGCTGTGGAGAGACCACCATCAAAGTTAGGAGGTTGGGTAGGATTGTAC