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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttttgtttctcttcttttagttaccaagtctctttgtgcaattacaaagagtgactgtaatggttacttcactttcag

Basic information

species Glycine max
transcript GLYMA04G42250.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42250.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g01180.t01 (Vitis vinifera), 5'ss of exon 7
GGTGTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagtttttgtttctcttcttttagttaccaagtctctttgtgcaattacaaagagtgactgtaatggttacttcactttcag-----------------------------
 |||||||||| |||||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||  |||||  ||| | ||||  |  | || || |   |  |   | | ||  |     |    ||  |  || || |    |||| | ||   |                             
AGTGTGAAGGACGAAGTGATTGTTGACCTTGTTGACCAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4397513|gb|AI496510.1|AI496510
EST:     CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|37993896|gb|CF805642.1|CF805642
EST:     CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|26048841|gb|CA785294.1|CA785294
EST:     CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|14259525|gb|BG882433.1|BG882433
EST:     CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
EST: gi|15662595|gb|BI699966.1|BI699966
EST:     CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTAC                         GGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG
genomic: CAGTGCCGTTCATACCAAAAGCGTGTCATGCTTCTTGTGAACAATACTACgtaagttttt ... tcactttcagGGATGAGCAACTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAGCG