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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAAgtaagtttgttattgtccttttatttaagtcctcctgccctggctttgtgacataacctaatgatttcatttaaagttctcacgaagcctatctattgtg...

Basic information

species Glycine max
transcript GLYMA04G41500.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 7
AATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAAgtaagtttgttattgtccttttatttaagtcctcctgccctggctttgtgacataacctaatgatttcatttaaagttctcacgaagcctatctattgtg
 || | |  |  || ||||| || || || || |||| | | || |||||||||||| |||| ||||||||||||||| |  |||||  ||||||  |||  | |  |||   | ||   ||         ||  |  | |||  |    | |  ||   |||  || ||       ||  |   ||| |  
GATTTGGGGGAAACAGATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCAAgtagattttctttcctccaactgttattgtttattcttactaacaat-tgaattg---tgaatatcaaattctaaattt---gagagttttcttatag--

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 8
AATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAAgtaagtttgttattgtccttttatttaagtcctcctgccctggct--ttgtgacataacctaatgatttcatttaaagttctcacgaagc--ctatctattgtg-------------------------------------
|||||||  |  |||||||||||||||||| |||||||||| |||||| ||||||| || || |||||||||| |   ||||| |||||||||||||| | ||  | ||    | |||      ||||    |  ||  |  |    |  | |  |  |   | || |  | |   | | |   |  || | || |                                     
AATCTTGGGGCTACTGATTATTACTGCCCTGCTTGCAAAGCAAAGTTTAATTTTGAATTGTCAGATTCAGAAAGATGGCAGCCTAAAGTCAAgtaagtctttttctatctcccttttttgcctttccttatttatctattcatttttttgctttctattactagttcatttgccagctatgtagcattcaaatgcgtattggatgtttaacaatggtagaattttcaatacag