1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGACCTCACAAATAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgttcgccactatcagtataactttatattatacaatgactatcattgtttcaaaagatgctaacttttttcttatacttcttaacag
species | Glycine max |
transcript | GLYMA04G40640.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAG GTTCGATACGAGAGCAGNNNNNNNCTAGCAGAGCAGCGTCCCAGAGTTAAAEST: gi|254336106|gb|GR841431.1|GR841431
genomic: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgttcgccact ... ttcttaacagGTTCGATACGAGAGCAGAAAAAAACTAGCAGAGCAGCGTCCCAGAGTTAAA
EST: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAG GTTCGATACGAGAGCAGNNNNNNNCTAGCAGAGCAGCGTCCCAGAGTTAAAEST: gi|51338435|gb|CO982301.1|CO982301
genomic: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgttcgccact ... ttcttaacagGTTCGATACGAGAGCAGAAAAAAACTAGCAGAGCAGCGTCCCAGAGTTAAA
EST: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAG GTTCGATACGAGAGCAGNNNNNNNCTAGCAGAGCAGCGTCCCAGAGTTAAAEST: gi|254324954|gb|GR834379.1|GR834379
genomic: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgttcgccact ... ttcttaacagGTTCGATACGAGAGCAGAAAAAAACTAGCAGAGCAGCGTCCCAGAGTTAAA
EST: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAG GTTCGATACGAGAGCAGNNNNNNNCTAGCAGAGCAGCGTCCCAGAGTTAAAEST: gi|254332303|gb|GR846348.1|GR846348
genomic: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgttcgccact ... ttcttaacagGTTCGATACGAGAGCAGAAAAAAACTAGCAGAGCAGCGTCCCAGAGTTAAA
EST: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAG GTTCGATACGAGAGCAGNNNNNNNCTAGCAGAGCAGCGTCCCAGAGTTAAAEST: gi|254323865|gb|GR840398.1|GR840398
genomic: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgttcgccact ... ttcttaacagGTTCGATACGAGAGCAGAAAAAAACTAGCAGAGCAGCGTCCCAGAGTTAAA
EST: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAG GTTCGATACGAGAGCAGNNNNNNNCTAGCAGAGCAGCGTCCCAGAGTTAAA
genomic: CTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgttcgccact ... ttcttaacagGTTCGATACGAGAGCAGAAAAAAACTAGCAGAGCAGCGTCCCAGAGTTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACCTCACAAATAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTTCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGgttcgccactatcagtataactttatattatacaatgactatcattgtttcaaaagatgctaacttttttcttatacttcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG