1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaatagttttatttcttgtttgcaccttttaaattgaaagcttactacatatttaagagaaatgagctataggattctaaaagtaatagataat...
species | Glycine max |
transcript | GLYMA04G40220.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATATTGTTGAGCTGTAA-CACATGTTCTGTGAGGAGTGTGTATCTGAATG GTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCEST: gi|207809978|gb|GD781492.1|GD781492
genomic: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaat ... tgtttttcagGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
EST: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATG GTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCEST: gi|22525728|gb|BU084539.1|BU084539
genomic: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaat ... tgtttttcagGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
EST: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATG GTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCEST: gi|22525809|gb|BU084620.1|BU084620
genomic: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaat ... tgtttttcagGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
EST: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATG GTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCEST: gi|31307902|gb|CD393105.1|CD393105
genomic: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaat ... tgtttttcagGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
EST: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATG GTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCEST: gi|151404475|gb|EV274289.1|EV274289
genomic: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaat ... tgtttttcagGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
EST: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATG GTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCEST: gi|209698400|gb|BW667195.1|BW667195
genomic: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaat ... tgtttttcagGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
EST: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATG GTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGCEST: gi|16343713|gb|BI969308.1|BI969308
genomic: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaat ... tgtttttcagGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
EST: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATG GTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
genomic: ATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaat ... tgtttttcagGTTTGAGAGAGAACGAACTTGTCCATTATGCAGGGCATTGGTAAAACCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGgtcagttaatagttttatttcttgtttgcaccttttaaattgaaagcttactacatatttaagagaaatgagctataggattctaaaagtaatagataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagtaa