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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTATTCGTGAAGTGGACCCTGATATTATTATTGGATACAACATTTGCAAATTTGACTTGCCATATCTTATTGAGgtgtgatttgactttgaaattaaaaagtacacttagagttgatagctgtaacgttttgttattaaaaaaaggttgtgtgcaagttgttgcggttcctgttctaatataatttaatttgttattgccttgttttcag

Basic information

species Glycine max
transcript GLYMA04G38800.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 8
GATTTTATTCGTGAAGTGGACCCTGATATTATTATTGGATACAACATTTGCAAATTTGACTTGCCATATCTTATTGAGgtgtgatttgactttgaaattaaaaagtacact-tagagttgatagct-gtaacgttttgttattaaaaaaaggttgtgtgcaagttgttgcggttcctgttctaatataatttaatttgttattgccttgttttcag
||||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||       || |||| || || ||  |   |  || | |||  |  | |  |  | ||||||    |   || ||   | ||  |||  |                                               
GATTTCATACGTGAAGTGGACCCTGATATTATTATTGGATACAATATCTGCAAATTTGACTTACCCTATCTTATTGAGgtacag---gattttgtaaatacaatatctgcaatacatttggcaatttgggatatcttgttac---agttagatttcatacat-ttgcag-----------------------------------------------

upper sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 8
lower sequence: AC196278.2_FGT004 (Zea mays), 5'ss of exon 4
GATTTTATTCGTGAAGTGGACCCTGATATTATTATTGGATACAACATTTGCAAATTTGACTTGCCATATCTTATTGAGgtgtgatttgactttgaaattaaaaagtacacttagagttgatagctgtaacgttttgttattaaaaaaaggttgtgtgcaagttgttgcggttcctgttctaatataatttaatttgttattgccttgttttcag
||||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||   ||   || |  | | |    ||     ||||      |  |  | |    |  ||  || ||   | ||     ||  |||  |                                               
GATTTCATACGTGAAGTGGATCCTGATATCATAATTGGATACAACATTTGCAAATTTGACATGCCCTATCTTATTGAGgtacaataacacctgtagagtgttcagattttttaggccaattgacaatcagccatatttggtacaatttgattacacacat-ttgcag-----------------------------------------------

upper sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S54_271V6.1 (Physcomitrella patens), 5'ss of exon 8
GATTTTATTCGTGAAGTGGACCCTGATATTATTATTGGATACAACATTTGCAAATTTGACTTGCCATATCTTATTGAGgtgtgatttg--actttgaaattaaaaa-gtacacttagagttgatagctgtaacgttttgttattaaaaaaaggttgtgtgcaagttgttgcggttcctgttctaatataatttaatttgttattgccttgttttcag
|| ||  |    ||||| || || |||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||  | | |    |  || | |||  |    ||  ||  | | | |   | |    | |  | ||| |  ||    ||  |    |  || |   ||| |                                       
GAGTTGGTCACAGAAGTAGATCCGGATATTATCATTGGATACAACATTTGTAAATTTGACTTACCCTATCTTATCGAGgtagggtatattgccatgtacttattatcaaacggtttcattcgctgcttcttgattatcttgattgactaattactggctaagtgcagtcgaccttcat---------------------------------------

upper sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S14_182V6.1 (Physcomitrella patens), 5'ss of exon 8
----------------------GATTTTATTCGTGAAGTGGACCCTGATATTATTATTGGATACAACATTTGCAAATTTGACTTGCCATATCTTATTGAGgtgtgatttgactttgaaattaaaaagtacacttagagttgatagctgtaacgttttgttattaaaaaaaggttgtgtgcaagttgttgcggttcctgttctaatataatttaatttgttattgccttgttttcag
                      || ||  |    |||||||| || ||||||||||||||||| || ||||| ||||||||||| || ||||||||||||||  |    | |  | || |      |   ||||     || |   | | ||      || || |   |   |||||| ||            |     | | || |  || | ||| ||  ||            
GATGGTAGTGGTGGCTTCGCAGGAGTTCGTCAAAGAAGTGGATCCAGATATTATTATTGGATATAATATTTGTAAATTTGACTTACCCTATCTTATTGAGgtaag---cggccatcaatt------gcttactt-----tggtgattctgac------ttgtttatgcacatttgtgtacaga-----ataaattacactatcatttggttcattttcttggtgt-----------