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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTTCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagtcaattgtccaacagtctttaagcacctccaagaagaaaatccatatggatttggttagaggtacaggttatcaactaattattttgtttcttcctag

Basic information

species Glycine max
transcript GLYMA04G38120.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38120.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0130g00170.t01 (Vitis vinifera), 5'ss of exon 8
AGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTTCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagt--caattgtcca-acagtc-----tttaagcacctc----------caagaagaaaatccatatgga-tttggttagaggtacaggttatcaactaattattttgtttcttcctag
||||||||||||||||| |||||||| |||||||   |||| ||||| || ||   ||||||||| || ||||| |||||||| ||||||||||| ||||  ||||| |    | | |      ||| |    |||           ||     |      | ||   |||  | |    |  || |||| ||   ||| ||   || ||    ||
AGGGTATTCTTGGAAGGAAATCCTTATCTCCTGGTGGTTACAATGGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctatt-ttgctttcctcttcag

upper sequence: GLYMA04G38120.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S64_201V6.1 (Physcomitrella patens), 5'ss of exon 8
AGGGTATTCTTGGAAGGGAATCCTTACCTCCTGGCAATTACCATGGTTGTTTCTCTTCTTCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagtcaat-tgtccaacagtctttaagcacctccaagaagaaaatccatatggatttggttagaggtacaggttatcaactaattattttgtttcttcctag-------
||||| || |||||||| |||||||| || || |   | || |||  |||||| ||||||||  | ||||||||||||||||| ||||| ||||||||       |||   | |   |  |  ||  ||          ||  || |     |   ||||     || |||   | || ||   | |  || |  ||        
AGGGTCTTTTTGGAAGGAAATCCTTATCTACTTGGGTTGACGATGTGTGTTTCACTTCTTCACACCGTCTTTGACTTCTTGGCATTCAAAAATGgtaaagaggcctgtatcatatcgtgcatacatttc----------atttatgtcttcctaagtagacacg-agattactcattatttcactcgcatcgtattatgctgcgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258898|gb|BG881806.1|BG881806
EST:     GGTTGGTTCTCTTCTTCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATG                         ACATCCAATTT
genomic: GGTTGTTTCTCTTCTTCATTCAGTCTTTGACTTCTTGGCTTTCAAGAATGgtaagtcaat ... ttcttcctagACATCCAATTT