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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagtcaattctacaaatggttgcag

Basic information

species Glycine max
transcript GLYMA04G37810.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37810.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G61960.2 (Arabidopsis thaliana), 5'ss of exon 11
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagtatttatttggacttgctagt-tgattgattctt----------tacttaaatga---agtaatcataaatatgtttctaagtcaattctacaa-atggttgcag
||| ||||| |||||||||||   ||| || || ||||| |||  ||||||||||||||| || |||||||||||||| ||||||||||| |    |     |||  |  | | |   | ||||           || || | |     ||| |    ||||    |||||   |||  |||    |  || |||
GTACACTTCGAAGATGCTTCTATCTGCTATTGACGAGCATTGTAAAGGAACTTATGATTTCCTTTATTTGCCAATTGACTTCAAGgcaagcaggcgtcctaccttttttatataagaaagtcttattaagcagacacgtagaggttttggtattttgcaataacgatctaatctaatcttaccctgtcatttcag

upper sequence: GLYMA04G37810.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G07290.1 (Arabidopsis thaliana), 5'ss of exon 11
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagta----tttatttggacttgctagttgattgattct-------ttacttaaatgaagtaatcataaatatgtttctaagtcaattctacaaatggttgcag
||||||||| |||||||| || | ||| || |||||| | |||  |||||| ||||||||||| |||||||||||||| ||||||| | | |    | |     |  ||   |  | || || |||            ||  | | |  ||  |  | ||   | ||| | ||   | |   |  ||||||
GTATACTTCTAAGATGCTCCTAGCTGCTATTGATGAGTACTGTAAAGGAACATATGATTTTCTTTATTTGCCAATTGACTTCAAGgtatgcaggcctcttacctgttttttcatctaatggagtctaatgcagccttatagcttagggtattttctacatcgatataaatgaaccttccttctatttgcag

upper sequence: GLYMA04G37810.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 12
GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagtatttatttggacttgctagttgattgattctttacttaaatgaagta-atcataaatatgtttctaagtcaa--ttctacaaatggt----tgcag
|||||||||||| |||||||||| ||| || ||||| ||   ||||||||||||||||||| | |||||||||||||| ||||| | |||||  |  ||| |     |   |  ||  ||    |   |||| |  ||   ||||   |  | ||| | ||    || | |||||  |    |||||
GTATACTTCAAAAATGCTTCTTGCTGCAATTGATGAACATCATCGAGGAACTTATGATTTTATTTATTTGCCAATTGACTTCAAAgtaagtaaat-cttgcatggattgaat--ttctttggggaagaaaatcacatatgacatatgcacatatctgattcgcctttttgcaaattctgttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9563828|gb|BE473337.1|BE473337
EST:     TTTTCTGTATTTGCCAATTGATTTCAAG                         AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
genomic: TTTTCTGTATTTGCCAATTGATTTCAAGgcaagtattt ... atggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
EST: gi|7796615|gb|AW782012.1|AW782012
EST:     ATTGATTTCAAG                         AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
genomic: ATTGATTTCAAGgcaagtattt ... atggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
EST: gi|151407718|gb|EV277533.1|EV277533
EST:     AGCAATATCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAG                         AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
genomic: AGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagtattt ... atggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
EST: gi|11273713|gb|BF324089.1|BF324089
EST:     AGCAATGTCGAGGAACTTATGATTGTCTGTATTTGCCAATTGATNTCCAG                         AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
genomic: AGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagtattt ... atggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA