Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTTACCCACTCCGTGGGCAACTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgcttctttctggtttgaattggaaaacatttgaaaatttgtttcaaaatttttcttaaacattgaatatctctcttcacgcctgttgctaatatttttatattattttctacag

Basic information

species Glycine max
transcript GLYMA04G35730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G35730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 8
CCTGTTACCCACTCCGTGGGCAACTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgcttctttctggtttgaattggaaaacatttgaaaatttgtttcaaaatttttcttaaacattgaatatctctcttcacgcctgttgctaatatttttatattattttctacag
|| ||||||||||| ||||| || ||||| |||||||| ||||||||||| |  |||||  |||||||||  || ||||| ||||| || ||  | || |||||| ||   |   |||| |||   |      |  ||| | ||| |  ||   |  || |   ||| |||     |     |||||    |                              
CCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCCGCACCCCTGTTTCACCGGTCAACTCATTGGgtaaaattaactgcatctgattt---tccatccatcttttagaatatcattttcatgttataagaaatatttttcctgggctttcactgtag------------------------------

upper sequence: GLYMA04G35730.1 (Glycine max), 5'ss of exon 8
lower sequence: EDP02676 (Chlamydomonas reinhardtii), 5'ss of exon 9
CCTGTTACCCACTCCGTGGGCAACTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgcttctttctggtttgaattggaaaacatttgaaaatttgtttcaaaatttttcttaaacattgaatatctctcttcacgcctgt-tgctaatatttttatattattttctacag
|| || || |||  | | |||||||| |||||||||||||||||||| | |  ||| ||  | |||||||  |  || || ||||    ||| ||  | ||| |       ||  |  ||     |  |    |     |     |||   |         ||   || | | |       ||   ||   |  ||    |     | ||             
CCGGTGACGCACAGCATCGGCAACTGCGTGAAGCGGGTTGTGGTCATCGCGGCCTCGGTGCTGTTCTTCCGCAACCCCGTGTCACTCCAGAACGCGCTGGgtgag------tcactgaggcagcgaacgcggcagggc-ggggccttg--ccggcggcgccctggcac-tgggacgctgtgctgtgcgtgggcgtgtacgtgggcgtgta-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469095|gb|CD411123.1|CD411123
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|10256147|gb|BE823913.1|BE823913
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|10846064|gb|BF069053.1|BF069053
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GAACTGCTATAACTCTTGCTGGCGTTCTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|6071133|gb|AW100520.1|AW100520
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|8403936|gb|BE059570.1|BE059570
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|192301535|gb|FG998443.1|FG998443
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCGCCTGTGAATGCTTTTG                         GAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|16346350|gb|BI971945.1|BI971945
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
EST: gi|58016526|gb|CX703268.1|CX703268
EST:     GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTG                         GAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA
genomic: GAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgc ... ttttctacagGAACTGCTATAGCTCTTGCTGGCGTTTTCCTCTATTCAAGGGTGAAGCGTA