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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagttccctttctatgtaatactttattttactaaactattcattaaaattgatttgcctctattttttaaatatatatcatattaatgcaatcattttgtctgaatcacaaaatccttgaag

Basic information

species Glycine max
transcript GLYMA04G33480.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G33480.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 14
GAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagttccctttctatgtaatactttattttactaaactattcattaaaattgatttgcctctattttttaaatatatatcatatta---atgcaatcattttgtctgaatcacaaaatccttgaag
|| || || ||||| || ||||| || |  || || || || ||||||||||| || || |||||  ||| |||||||||||||||||||||||| |||   ||| ||  |   |||  || |  | |||| ||   || ||      | |   ||   |||| || | ||| || |        | |||||    || ||||| |||  ||| |                 
GAAAGGCTAGAGAGGGAGTACAACTTAAATCTTATTACCACAGCTCCAAGTGTTGTTTATAGGGTGAACTCTGTAAATGGTGATACTgtaatttcctcttgatcccaaact---tttaaatattcttctttgttcc-ctgaa------aatcgcatccttttgtctttctttcttgatctagagccttattacctgtgaaatcaattttactgcag----------------

upper sequence: GLYMA04G33480.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 14
GAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACTgtaatttcttctcattcctaagttccctttctatgtaatactttattttactaaactattcattaaaattgatttgcctctattttttaaatatatatcatattaatgcaatcattttgtctgaatcacaaaatccttgaag
|| || ||||||||||||||||| |||| | | ||||| |||||||||||||| || ||||| ||  ||||| ||||||||||||||||||| || ||| | ||||||  || ||   |   |  || |||| |||  |   |||       | ||||   |||    || ||  |  |  |||||  |||||||                                  
GAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACTgtaatctcctcttaatcctaaactcactgcattcattttattttacttttttggtcta-------agattg--ctgcactaatattgaattttcatatctgattaatga---------------------------------