Sequence
atgc intronic sequence ATGC exonic sequenceTCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGgtatggttttaggatttgtttcctccctagatgtctgtttcttttttgcttatgtatctactgtagttttctgtaagtatgtgtacttcacactatgtcagttccattatttatccgggtttctttccttcag
Basic information
species | Glycine max |
transcript | GLYMA04G32540.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G32540.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g07160.t01 (Vitis vinifera), 5'ss of exon 8
TCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGgtatggttttaggatttgtttcctccctag-atgtctgtttcttttttgcttatgtatctactgtagttttctgtaagtatgtgtacttcacactatgtcagttccattatttatccgggtttctttccttcag
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TCTTAACCGAAAGCGGGAGAAGGTGAATCGAAAGTATACACAAACAGTGGACAGGGGGCGCCAACTGTCCCCTGGATTCTTGGAGGAAGCACTGGATGAGgtctgcgctttccatctgctttctctataacatttatcctctttttttttttccctttctattcttgtcttgcttgaaaa---atactggatatttttgttat-------------------------------
upper sequence: GLYMA04G32540.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g07000.t01 (Vitis vinifera), 5'ss of exon 4
TCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGgtatggttttaggatttgtttcctccctagatgtctgtttcttttttgcttatgtatctactgtagttttctgtaagtatgtgtacttcacactatgtcagttccattatttatccgggtttctttccttcag
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TCTTAACCGAAAGCGGGAGAAGGTGAATCGAAAGTATACACAAACAGTGGACAGGGGGCGCCAACTGTCCCCTGGATTCTTGGAGGAAGCACTGGATGAGgtctgcgctttccatctgctttctctataacatttttcctcttttttttttccctttcttttctcgtcttgcttgaaaa---atactggatatttttgttatc------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15201494|gb|BI424900.1|BI424900EST: AGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAG GAGGATGAAGCAGACTATTATGATAATCATCGTTCTCAGCGCCGCTTTGAG
genomic: AGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGgtatggtttt ... tttccttcagGAGGATGAAGCAGACTATTATGATAATCATCGTTCTCAGCGCCGCTTTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGgtatggttttaggatttgtttcctccctagatgtctgtttcttttttgcttatgtatctactgtagttttctgtaagtatgtgtacttcacactatgtcagttccattatttatccgggtttctttccttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG