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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAAATTGAATCTTTCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatgaagttttcatcttctgtcacctgccaaaccaatgattattacagtttgacatataaactgctacatgtttactatgtgaatag

Basic information

species Glycine max
transcript GLYMA04G30350.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 8
AGAAGAAATTGAATCTTTCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatgaagttttcatcttctgtcacctgccaaaccaatgattattacagtttgacatataaactgctacatgtttactatgtgaatag
|||||||  | || ||| ||| ||||||||||||||||||||||||||| ||||| ||  | ||||| ||| |  | ||  | ||||||||||| || ||||  |  |     | | |||   ||     |   |||      ||| | |||  |    |||||||     |  | |   ||   |    ||
AGAAGAAGCTTAACCTTCCTGCTCTTCCAACAACTACAATTGGATCTTTTCCTCAGACCACAGATCTCAGACGGATACGCAGGGAATTCAAGGCCAAAAAgtaggccta----tctaatccagtgatgtatctgaaat-----attctaacatatcattatataaatactgatgtatacgctgcatttgcag

upper sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 8
AGAAGAAATTGAATCTTTCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatgaagttttcatcttctgt-cacctgccaaaccaatgattat-tacagtttgacatataaactgctacatgtttactatgtgaatag
|||||||  ||   ||| | || ||||| || || || ||||||||||||||||| ||    ||||||||||||||||| ||||| ||||||||||| ||||||| ||     ||  ||     ||    |  ||||| || || || | |      |   ||   | ||   | || | | || | | |  ||
AGAAGAAGCTGGGCCTTCCAGTCCTTCCCACTACAACTATTGGATCTTTCCCTCAGACCATGGATCTTAGAAGAGTTCGCCGTGAGTTCAAGGCTAAGAAgtgagcattctacttctatagatagtatttcccccaaatcactgcttctgtctgaccttttatcacatctatgatatttatgctctttta-cag

upper sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ28889 (Selaginella moellendorffii), 5'ss of exon 7
AGAAGAAATTGAATCTTTCTGTTCTTCCAACAACTACAATTGGATCTTTCCCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatgaagttttcatc----ttctgtcacctgccaaaccaatgattattacagtttgacatataaactgctacatgtttactatgtgaatag
| ||| | || || ||| || |||| ||||||||||||||||||||||||||||| || || || ||  |  |||| || |||||  | |||   || |||| |||    | ||||   |    |||| ||   |||  | ||    ||   |    |  |                                   
AAAAGCACTTAAAGCTTCCTATTCTGCCAACAACTACAATTGGATCTTTCCCTCAGACAGCTGACCTGCGCCGAGTGCGACGTGATGTGAAGAGCAAGAAgtaagtgaagacttttagacaggattctatcttatgc--atccgtgcatccgtgtgatcag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395301|gb|EV265172.1|EV265172
EST:     CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAG-CTAACAA                         GATCTCCGAGGA-GATTATATCCGTTTCATTAAG-AG-AAATTTACA-TGT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGT
EST: gi|16348382|gb|BI973977.1|BI973977
EST:     CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGT
EST: gi|14990789|gb|BI316462.1|BI316462
EST:     CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAA                         GATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATCTACAATGT
genomic: CCTCAAACTGCCGATCTTAGAAGAGTTCGTCGTGAATTCAAGGCTAACAAgtgagtatga ... atgtgaatagGATCTCCGAGGAAGATTATATCCGTTTCATTAAGGAGGAAATTTACAATGT