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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGgttaatacatcaaactaatataatttgcaaacaagaatataaaattaatttttttattgcttgataaattgattttgagaaattttaaaattttacatta...

Basic information

species Glycine max
transcript GLYMA04G28970.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G28970.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g72310.1 (Oryza sativa), 5'ss of exon 6
CAAATTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGgttaataca---tcaaactaatat--aatttgcaaacaagaatataaaattaatt--tttttattgcttg--ataaattgattttgagaaattttaaaattttacatta------------
||   || |||||  |  | |||||||||| ||| ||| |||| |||||||||||||||||  |  |||| ||||| ||||| ||||| ||||| || |||| |    |   || || |  | |   |||  | ||  |   | | | || |  |   | | | ||  ||  ||  | | |||     |  | ||  | ||   | ||             
CAGCATGCATGGCCTTAGTCATGGATGGAACTGCAGCACTGGGCCTTGATTTGAGTTTTGTCTCTTATGTTTTTCTGATGGAACCAATATGGGATAGGAGgtaatcttactctctaattgctcttcgattgccgaaataacttgtgacatcatctcgctatcaatgtgtgccattgactcattcacgaatgtgttctatttcccccttttcatttgatcag

upper sequence: GLYMA04G28970.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G167668_T01 (Zea mays), 5'ss of exon 1
CAAATTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGgttaatacatcaaactaatataatttgcaaacaagaatataaaattaatttttttattgcttgataaattgattttgagaaattttaaaattttacatta
|||  ||||||||  |  | |||||||| | ||||||| |||| ||||||||||||||||| || | ||| ||||| ||||| ||||| ||||| || |||| |    || |  || |||    ||  ||| ||  | ||   ||    ||   |    ||   |  |    |  | |    |        |  | |   
CAACGTGTATGGCTTTAGTCATGGATGGGACTGCTGCACTGGGGCTTGATTTGAGTTTTGTGACTCGTGTTTTTCTCATGGAACCAATATGGGATAGGAGgtaatataattattctgatacttcttcaaaataactaaattgcatctccttcaattccactatgtttaccagtcattatggttccatggggtaaatagat

upper sequence: GLYMA04G28970.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G54460.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAATTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGgttaatacatcaaactaatataattt--gcaaacaagaatataaaattaattttt--ttattgcttgataaattgattttgagaaattttaaaattttacatta-
|  |||| ||||||||| |||||||||||||||  ||  | |||||||||||||||||||| || ||||| || || ||||| ||||| ||||| | ||||| |  || |  | | | | ||  ||  |||||||   | | ||||| | |      | |   |||||| |  |  | ||    | ||     |||||   ||| 
CTGATTGCATGGCACTTTTGATGGATGGAAGTGGGGCCCTTGGTCTTGATTTGAGTTTTGTAACACATGTTTTCCTGATGGAACCAATCTGGGATAAAAGgt-acgactttgagcaattttacattcagcaaacacagacaaaaaatcagtaacaaataaaaacttgatgatcttctgtttttcacttc----attttgttttaa

upper sequence: GLYMA04G28970.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 7
CAAATTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGATTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGgt--taatacatcaaactaatataatttgcaaacaagaatataaaattaatttttttattgcttgataaattgattttga--gaaattttaaaattttacatta
|| |||||||||| ||| |||||||||||||||| ||||| || ||||||||||| ||||| || ||||| ||| | ||||| ||||| |||||||||||||  ||||   |   | |     || ||| ||| | |  | |  |||   | |   ||| |  || | |  || ||   |  |||| | |    |||   ||| 
CAGATTGTATGGCTCTTTTGATGGATGGAAGTGCAGCATTAGGCCTTGATTTGAGCTTTGTAACACATGTGTTTTTGATGGAACCAATATGGGACAGAAGgtgataattattttgagtgccgcaaattggaaatatg--ttttgaat--gtctaggtatcggatggttagatgtttccaacagaaaatgttgcttttctaattc